Gene : Cagra.1262s0013 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23163:SF0 - E3 UBIQUITIN-PROTEIN LIGASE BRE1 Genomic Order:  13
Name:  ? Cagra.1262s0013 Secondary Identifier:  ? PAC:28906727
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1262s0013 0.5kb upstream 0.5kb upstream 5728 true Scaffold1262: 56367-62094 Capsella grandiflora
Cagra.1262s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold1262: 61595-62094 Capsella grandiflora
Cagra.1262s0013 0.5kb downstream 0.5kb downstream 5728 true Scaffold1262: 55867-61594 Capsella grandiflora
Cagra.1262s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold1262: 55867-56366 Capsella grandiflora
Cagra.1262s0013 1.0kb upstream 1.0kb upstream 6228 true Scaffold1262: 56367-62594 Capsella grandiflora
Cagra.1262s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold1262: 61595-62594 Capsella grandiflora
Cagra.1262s0013 1.0kb downstream 1.0kb downstream 6228 true Scaffold1262: 55367-61594 Capsella grandiflora
Cagra.1262s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold1262: 55367-56366 Capsella grandiflora
Cagra.1262s0013 2.0kb upstream 2.0kb upstream 7228 true Scaffold1262: 56367-63594 Capsella grandiflora
Cagra.1262s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold1262: 61595-63594 Capsella grandiflora
Cagra.1262s0013 2.0kb downstream 2.0kb downstream 7228 true Scaffold1262: 54367-61594 Capsella grandiflora
Cagra.1262s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold1262: 54367-56366 Capsella grandiflora
Cagra.1262s0013 5.0kb upstream 5.0kb upstream 10228 true Scaffold1262: 56367-66594 Capsella grandiflora
Cagra.1262s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold1262: 61595-66594 Capsella grandiflora
Cagra.1262s0013 5.0kb downstream 5.0kb downstream 10228 true Scaffold1262: 51367-61594 Capsella grandiflora
Cagra.1262s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold1262: 51367-56366 Capsella grandiflora
Cagra.1262s0013 10.0kb upstream 10.0kb upstream 15228 true Scaffold1262: 56367-71594 Capsella grandiflora
Cagra.1262s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold1262: 61595-71594 Capsella grandiflora
Cagra.1262s0013 10.0kb downstream 10.0kb downstream 15228 true Scaffold1262: 46367-61594 Capsella grandiflora
Cagra.1262s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold1262: 46367-56366 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366402 5261 Brassicaceae View MSA
123830825 5264 Brassicales-Malvales View MSA
124341385 5266 SBM View MSA
124238716 5268 Malvidae View MSA
124068574 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain