Gene : Cagra.1262s0020 C. grandiflora v1.1
Defline:  (1 of 1) PTHR18896:SF79 - PHOSPHOLIPASE D EPSILON Genomic Order:  20
Name:  ? Cagra.1262s0020 Secondary Identifier:  ? PAC:28906728
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora LIPASYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3561 Capsella grandiflora pathologic  
Cgrandiflora PWY-7039 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1262s0020 0.5kb upstream 0.5kb upstream 3055 true Scaffold1262: 78492-81546 Capsella grandiflora
Cagra.1262s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold1262: 78492-78991 Capsella grandiflora
Cagra.1262s0020 0.5kb downstream 0.5kb downstream 3055 true Scaffold1262: 78992-82046 Capsella grandiflora
Cagra.1262s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold1262: 81547-82046 Capsella grandiflora
Cagra.1262s0020 1.0kb upstream 1.0kb upstream 3555 true Scaffold1262: 77992-81546 Capsella grandiflora
Cagra.1262s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold1262: 77992-78991 Capsella grandiflora
Cagra.1262s0020 1.0kb downstream 1.0kb downstream 3555 true Scaffold1262: 78992-82546 Capsella grandiflora
Cagra.1262s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold1262: 81547-82546 Capsella grandiflora
Cagra.1262s0020 2.0kb upstream 2.0kb upstream 4555 true Scaffold1262: 76992-81546 Capsella grandiflora
Cagra.1262s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold1262: 76992-78991 Capsella grandiflora
Cagra.1262s0020 2.0kb downstream 2.0kb downstream 4555 true Scaffold1262: 78992-83546 Capsella grandiflora
Cagra.1262s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold1262: 81547-83546 Capsella grandiflora
Cagra.1262s0020 5.0kb upstream 5.0kb upstream 7555 true Scaffold1262: 73992-81546 Capsella grandiflora
Cagra.1262s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold1262: 73992-78991 Capsella grandiflora
Cagra.1262s0020 5.0kb downstream 5.0kb downstream 7555 true Scaffold1262: 78992-86546 Capsella grandiflora
Cagra.1262s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold1262: 81547-86546 Capsella grandiflora
Cagra.1262s0020 10.0kb upstream 10.0kb upstream 12555 true Scaffold1262: 68992-81546 Capsella grandiflora
Cagra.1262s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold1262: 68992-78991 Capsella grandiflora
Cagra.1262s0020 10.0kb downstream 10.0kb downstream 12555 true Scaffold1262: 78992-91546 Capsella grandiflora
Cagra.1262s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold1262: 81547-91546 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361991 5261 Brassicaceae View MSA
123828918 5264 Brassicales-Malvales View MSA
124342668 5266 SBM View MSA
124242192 5268 Malvidae View MSA
124061086 5270 Rosid View MSA
123739430 5271 Pentapetalae View MSA
122786785 5272 Eudicot View MSA
122045742 5273 Angiosperm View MSA
121310493 5274 Embryophyte View MSA
123347963 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain