Gene : Cagra.1268s0028 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31321:SF17 - PECTINESTERASE 53-RELATED Genomic Order:  28
Name:  ? Cagra.1268s0028 Secondary Identifier:  ? PAC:28893623
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1268s0028 0.5kb upstream 0.5kb upstream 3268 true Scaffold1268: 83718-86985 Capsella grandiflora
Cagra.1268s0028 0.5kb upstream 0.5kb upstream 500 false Scaffold1268: 86486-86985 Capsella grandiflora
Cagra.1268s0028 0.5kb downstream 0.5kb downstream 3268 true Scaffold1268: 83218-86485 Capsella grandiflora
Cagra.1268s0028 0.5kb downstream 0.5kb downstream 500 false Scaffold1268: 83218-83717 Capsella grandiflora
Cagra.1268s0028 1.0kb upstream 1.0kb upstream 3768 true Scaffold1268: 83718-87485 Capsella grandiflora
Cagra.1268s0028 1.0kb upstream 1.0kb upstream 1000 false Scaffold1268: 86486-87485 Capsella grandiflora
Cagra.1268s0028 1.0kb downstream 1.0kb downstream 3768 true Scaffold1268: 82718-86485 Capsella grandiflora
Cagra.1268s0028 1.0kb downstream 1.0kb downstream 1000 false Scaffold1268: 82718-83717 Capsella grandiflora
Cagra.1268s0028 2.0kb upstream 2.0kb upstream 4768 true Scaffold1268: 83718-88485 Capsella grandiflora
Cagra.1268s0028 2.0kb upstream 2.0kb upstream 2000 false Scaffold1268: 86486-88485 Capsella grandiflora
Cagra.1268s0028 2.0kb downstream 2.0kb downstream 4768 true Scaffold1268: 81718-86485 Capsella grandiflora
Cagra.1268s0028 2.0kb downstream 2.0kb downstream 2000 false Scaffold1268: 81718-83717 Capsella grandiflora
Cagra.1268s0028 5.0kb upstream 5.0kb upstream 7768 true Scaffold1268: 83718-91485 Capsella grandiflora
Cagra.1268s0028 5.0kb upstream 5.0kb upstream 5000 false Scaffold1268: 86486-91485 Capsella grandiflora
Cagra.1268s0028 5.0kb downstream 5.0kb downstream 7768 true Scaffold1268: 78718-86485 Capsella grandiflora
Cagra.1268s0028 5.0kb downstream 5.0kb downstream 5000 false Scaffold1268: 78718-83717 Capsella grandiflora
Cagra.1268s0028 10.0kb upstream 10.0kb upstream 12768 true Scaffold1268: 83718-96485 Capsella grandiflora
Cagra.1268s0028 10.0kb upstream 10.0kb upstream 10000 false Scaffold1268: 86486-96485 Capsella grandiflora
Cagra.1268s0028 10.0kb downstream 10.0kb downstream 12768 true Scaffold1268: 73718-86485 Capsella grandiflora
Cagra.1268s0028 10.0kb downstream 10.0kb downstream 10000 false Scaffold1268: 73718-83717 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373168 5261 Brassicaceae View MSA
123835653 5264 Brassicales-Malvales View MSA
124350077 5266 SBM View MSA
124237911 5268 Malvidae View MSA
124072507 5270 Rosid View MSA
123749386 5271 Pentapetalae View MSA
122794986 5272 Eudicot View MSA
122041979 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain