Gene : Cagra.1261s0012 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31500:SF15 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  12
Name:  ? Cagra.1261s0012 Secondary Identifier:  ? PAC:28895202
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1261s0012 0.5kb upstream 0.5kb upstream 3152 true Scaffold1261: 39582-42733 Capsella grandiflora
Cagra.1261s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold1261: 42234-42733 Capsella grandiflora
Cagra.1261s0012 0.5kb downstream 0.5kb downstream 3152 true Scaffold1261: 39082-42233 Capsella grandiflora
Cagra.1261s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold1261: 39082-39581 Capsella grandiflora
Cagra.1261s0012 1.0kb upstream 1.0kb upstream 3652 true Scaffold1261: 39582-43233 Capsella grandiflora
Cagra.1261s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold1261: 42234-43233 Capsella grandiflora
Cagra.1261s0012 1.0kb downstream 1.0kb downstream 3652 true Scaffold1261: 38582-42233 Capsella grandiflora
Cagra.1261s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold1261: 38582-39581 Capsella grandiflora
Cagra.1261s0012 2.0kb upstream 2.0kb upstream 4652 true Scaffold1261: 39582-44233 Capsella grandiflora
Cagra.1261s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold1261: 42234-44233 Capsella grandiflora
Cagra.1261s0012 2.0kb downstream 2.0kb downstream 4652 true Scaffold1261: 37582-42233 Capsella grandiflora
Cagra.1261s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold1261: 37582-39581 Capsella grandiflora
Cagra.1261s0012 5.0kb upstream 5.0kb upstream 7652 true Scaffold1261: 39582-47233 Capsella grandiflora
Cagra.1261s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold1261: 42234-47233 Capsella grandiflora
Cagra.1261s0012 5.0kb downstream 5.0kb downstream 7652 true Scaffold1261: 34582-42233 Capsella grandiflora
Cagra.1261s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold1261: 34582-39581 Capsella grandiflora
Cagra.1261s0012 10.0kb upstream 10.0kb upstream 12652 true Scaffold1261: 39582-52233 Capsella grandiflora
Cagra.1261s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold1261: 42234-52233 Capsella grandiflora
Cagra.1261s0012 10.0kb downstream 10.0kb downstream 12652 true Scaffold1261: 29582-42233 Capsella grandiflora
Cagra.1261s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold1261: 29582-39581 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365866 5261 Brassicaceae View MSA
123841387 5264 Brassicales-Malvales View MSA
124348766 5266 SBM View MSA
124248140 5268 Malvidae View MSA
124071035 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain