Gene : Cagra.1226s0065 C. grandiflora v1.1
Defline:  (1 of 2) PTHR13301:SF51 - CELLULOSE SYNTHASE-LIKE PROTEIN G1-RELATED Genomic Order:  65
Name:  ? Cagra.1226s0065 Secondary Identifier:  ? PAC:28916553
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1001 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1226s0065 0.5kb upstream 0.5kb upstream 3215 true Scaffold1226: 267066-270280 Capsella grandiflora
Cagra.1226s0065 0.5kb upstream 0.5kb upstream 500 false Scaffold1226: 267066-267565 Capsella grandiflora
Cagra.1226s0065 0.5kb downstream 0.5kb downstream 3215 true Scaffold1226: 267566-270780 Capsella grandiflora
Cagra.1226s0065 0.5kb downstream 0.5kb downstream 500 false Scaffold1226: 270281-270780 Capsella grandiflora
Cagra.1226s0065 1.0kb upstream 1.0kb upstream 3715 true Scaffold1226: 266566-270280 Capsella grandiflora
Cagra.1226s0065 1.0kb upstream 1.0kb upstream 1000 false Scaffold1226: 266566-267565 Capsella grandiflora
Cagra.1226s0065 1.0kb downstream 1.0kb downstream 3715 true Scaffold1226: 267566-271280 Capsella grandiflora
Cagra.1226s0065 1.0kb downstream 1.0kb downstream 1000 false Scaffold1226: 270281-271280 Capsella grandiflora
Cagra.1226s0065 2.0kb upstream 2.0kb upstream 4715 true Scaffold1226: 265566-270280 Capsella grandiflora
Cagra.1226s0065 2.0kb upstream 2.0kb upstream 2000 false Scaffold1226: 265566-267565 Capsella grandiflora
Cagra.1226s0065 2.0kb downstream 2.0kb downstream 4715 true Scaffold1226: 267566-272280 Capsella grandiflora
Cagra.1226s0065 2.0kb downstream 2.0kb downstream 2000 false Scaffold1226: 270281-272280 Capsella grandiflora
Cagra.1226s0065 5.0kb upstream 5.0kb upstream 7715 true Scaffold1226: 262566-270280 Capsella grandiflora
Cagra.1226s0065 5.0kb upstream 5.0kb upstream 5000 false Scaffold1226: 262566-267565 Capsella grandiflora
Cagra.1226s0065 5.0kb downstream 5.0kb downstream 7715 true Scaffold1226: 267566-275280 Capsella grandiflora
Cagra.1226s0065 5.0kb downstream 5.0kb downstream 5000 false Scaffold1226: 270281-275280 Capsella grandiflora
Cagra.1226s0065 10.0kb upstream 10.0kb upstream 12715 true Scaffold1226: 257566-270280 Capsella grandiflora
Cagra.1226s0065 10.0kb upstream 10.0kb upstream 10000 false Scaffold1226: 257566-267565 Capsella grandiflora
Cagra.1226s0065 10.0kb downstream 10.0kb downstream 12715 true Scaffold1226: 267566-280280 Capsella grandiflora
Cagra.1226s0065 10.0kb downstream 10.0kb downstream 10000 false Scaffold1226: 270281-280280 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380198 5261 Brassicaceae View MSA
123840606 5264 Brassicales-Malvales View MSA
124346924 5266 SBM View MSA
124240954 5268 Malvidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain