Gene : Cagra.1225s0039 C. grandiflora v1.1
Defline:  (1 of 3) PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Genomic Order:  39
Name:  ? Cagra.1225s0039 Secondary Identifier:  ? PAC:28904199
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1225s0039 0.5kb upstream 0.5kb upstream 2473 true Scaffold1225: 167323-169795 Capsella grandiflora
Cagra.1225s0039 0.5kb upstream 0.5kb upstream 500 false Scaffold1225: 169296-169795 Capsella grandiflora
Cagra.1225s0039 0.5kb downstream 0.5kb downstream 2473 true Scaffold1225: 166823-169295 Capsella grandiflora
Cagra.1225s0039 0.5kb downstream 0.5kb downstream 500 false Scaffold1225: 166823-167322 Capsella grandiflora
Cagra.1225s0039 1.0kb upstream 1.0kb upstream 2973 true Scaffold1225: 167323-170295 Capsella grandiflora
Cagra.1225s0039 1.0kb upstream 1.0kb upstream 1000 false Scaffold1225: 169296-170295 Capsella grandiflora
Cagra.1225s0039 1.0kb downstream 1.0kb downstream 2973 true Scaffold1225: 166323-169295 Capsella grandiflora
Cagra.1225s0039 1.0kb downstream 1.0kb downstream 1000 false Scaffold1225: 166323-167322 Capsella grandiflora
Cagra.1225s0039 2.0kb upstream 2.0kb upstream 3973 true Scaffold1225: 167323-171295 Capsella grandiflora
Cagra.1225s0039 2.0kb upstream 2.0kb upstream 2000 false Scaffold1225: 169296-171295 Capsella grandiflora
Cagra.1225s0039 2.0kb downstream 2.0kb downstream 3973 true Scaffold1225: 165323-169295 Capsella grandiflora
Cagra.1225s0039 2.0kb downstream 2.0kb downstream 2000 false Scaffold1225: 165323-167322 Capsella grandiflora
Cagra.1225s0039 5.0kb upstream 5.0kb upstream 6973 true Scaffold1225: 167323-174295 Capsella grandiflora
Cagra.1225s0039 5.0kb upstream 5.0kb upstream 5000 false Scaffold1225: 169296-174295 Capsella grandiflora
Cagra.1225s0039 5.0kb downstream 5.0kb downstream 6973 true Scaffold1225: 162323-169295 Capsella grandiflora
Cagra.1225s0039 5.0kb downstream 5.0kb downstream 5000 false Scaffold1225: 162323-167322 Capsella grandiflora
Cagra.1225s0039 10.0kb upstream 10.0kb upstream 11973 true Scaffold1225: 167323-179295 Capsella grandiflora
Cagra.1225s0039 10.0kb upstream 10.0kb upstream 10000 false Scaffold1225: 169296-179295 Capsella grandiflora
Cagra.1225s0039 10.0kb downstream 10.0kb downstream 11973 true Scaffold1225: 157323-169295 Capsella grandiflora
Cagra.1225s0039 10.0kb downstream 10.0kb downstream 10000 false Scaffold1225: 157323-167322 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380568 5261 Brassicaceae View MSA
123839943 5264 Brassicales-Malvales View MSA
124350011 5266 SBM View MSA
124254285 5268 Malvidae View MSA
124062039 5270 Rosid View MSA
123752500 5271 Pentapetalae View MSA
122788518 5272 Eudicot View MSA
122051681 5273 Angiosperm View MSA
121312610 5274 Embryophyte View MSA
123349767 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain