Gene : Cagra.1225s0047 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22851 - U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN Genomic Order:  47
Name:  ? Cagra.1225s0047 Secondary Identifier:  ? PAC:28904076
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1225s0047 0.5kb upstream 0.5kb upstream 3899 true Scaffold1225: 192939-196837 Capsella grandiflora
Cagra.1225s0047 0.5kb upstream 0.5kb upstream 500 false Scaffold1225: 192939-193438 Capsella grandiflora
Cagra.1225s0047 0.5kb downstream 0.5kb downstream 3899 true Scaffold1225: 193439-197337 Capsella grandiflora
Cagra.1225s0047 0.5kb downstream 0.5kb downstream 500 false Scaffold1225: 196838-197337 Capsella grandiflora
Cagra.1225s0047 1.0kb upstream 1.0kb upstream 4399 true Scaffold1225: 192439-196837 Capsella grandiflora
Cagra.1225s0047 1.0kb upstream 1.0kb upstream 1000 false Scaffold1225: 192439-193438 Capsella grandiflora
Cagra.1225s0047 1.0kb downstream 1.0kb downstream 4399 true Scaffold1225: 193439-197837 Capsella grandiflora
Cagra.1225s0047 1.0kb downstream 1.0kb downstream 1000 false Scaffold1225: 196838-197837 Capsella grandiflora
Cagra.1225s0047 2.0kb upstream 2.0kb upstream 5399 true Scaffold1225: 191439-196837 Capsella grandiflora
Cagra.1225s0047 2.0kb upstream 2.0kb upstream 2000 false Scaffold1225: 191439-193438 Capsella grandiflora
Cagra.1225s0047 2.0kb downstream 2.0kb downstream 5399 true Scaffold1225: 193439-198837 Capsella grandiflora
Cagra.1225s0047 2.0kb downstream 2.0kb downstream 2000 false Scaffold1225: 196838-198837 Capsella grandiflora
Cagra.1225s0047 5.0kb upstream 5.0kb upstream 8399 true Scaffold1225: 188439-196837 Capsella grandiflora
Cagra.1225s0047 5.0kb upstream 5.0kb upstream 5000 false Scaffold1225: 188439-193438 Capsella grandiflora
Cagra.1225s0047 5.0kb downstream 5.0kb downstream 8399 true Scaffold1225: 193439-201837 Capsella grandiflora
Cagra.1225s0047 5.0kb downstream 5.0kb downstream 5000 false Scaffold1225: 196838-201837 Capsella grandiflora
Cagra.1225s0047 10.0kb upstream 10.0kb upstream 13399 true Scaffold1225: 183439-196837 Capsella grandiflora
Cagra.1225s0047 10.0kb upstream 10.0kb upstream 10000 false Scaffold1225: 183439-193438 Capsella grandiflora
Cagra.1225s0047 10.0kb downstream 10.0kb downstream 13399 true Scaffold1225: 193439-206837 Capsella grandiflora
Cagra.1225s0047 10.0kb downstream 10.0kb downstream 10000 false Scaffold1225: 196838-206837 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362244 5261 Brassicaceae View MSA
123831868 5264 Brassicales-Malvales View MSA
124340582 5266 SBM View MSA
124241754 5268 Malvidae View MSA
124063695 5270 Rosid View MSA
123748291 5271 Pentapetalae View MSA
122792543 5272 Eudicot View MSA
122047654 5273 Angiosperm View MSA
121347160 5274 Embryophyte View MSA
123425121 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain