Gene : Cagra.1225s0090 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12601:SF9 - TETRATRICOPEPTIDE REPEAT DOMAIN PROTEIN Genomic Order:  90
Name:  ? Cagra.1225s0090 Secondary Identifier:  ? PAC:28904096
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1225s0090 0.5kb upstream 0.5kb upstream 9489 true Scaffold1225: 305188-314676 Capsella grandiflora
Cagra.1225s0090 0.5kb upstream 0.5kb upstream 500 false Scaffold1225: 305188-305687 Capsella grandiflora
Cagra.1225s0090 0.5kb downstream 0.5kb downstream 9489 true Scaffold1225: 305688-315176 Capsella grandiflora
Cagra.1225s0090 0.5kb downstream 0.5kb downstream 500 false Scaffold1225: 314677-315176 Capsella grandiflora
Cagra.1225s0090 1.0kb upstream 1.0kb upstream 9989 true Scaffold1225: 304688-314676 Capsella grandiflora
Cagra.1225s0090 1.0kb upstream 1.0kb upstream 1000 false Scaffold1225: 304688-305687 Capsella grandiflora
Cagra.1225s0090 1.0kb downstream 1.0kb downstream 9989 true Scaffold1225: 305688-315676 Capsella grandiflora
Cagra.1225s0090 1.0kb downstream 1.0kb downstream 1000 false Scaffold1225: 314677-315676 Capsella grandiflora
Cagra.1225s0090 2.0kb upstream 2.0kb upstream 10989 true Scaffold1225: 303688-314676 Capsella grandiflora
Cagra.1225s0090 2.0kb upstream 2.0kb upstream 2000 false Scaffold1225: 303688-305687 Capsella grandiflora
Cagra.1225s0090 2.0kb downstream 2.0kb downstream 10989 true Scaffold1225: 305688-316676 Capsella grandiflora
Cagra.1225s0090 2.0kb downstream 2.0kb downstream 2000 false Scaffold1225: 314677-316676 Capsella grandiflora
Cagra.1225s0090 5.0kb upstream 5.0kb upstream 13989 true Scaffold1225: 300688-314676 Capsella grandiflora
Cagra.1225s0090 5.0kb upstream 5.0kb upstream 5000 false Scaffold1225: 300688-305687 Capsella grandiflora
Cagra.1225s0090 5.0kb downstream 5.0kb downstream 13989 true Scaffold1225: 305688-319676 Capsella grandiflora
Cagra.1225s0090 5.0kb downstream 5.0kb downstream 5000 false Scaffold1225: 314677-319676 Capsella grandiflora
Cagra.1225s0090 10.0kb upstream 10.0kb upstream 18989 true Scaffold1225: 295688-314676 Capsella grandiflora
Cagra.1225s0090 10.0kb upstream 10.0kb upstream 10000 false Scaffold1225: 295688-305687 Capsella grandiflora
Cagra.1225s0090 10.0kb downstream 10.0kb downstream 18989 true Scaffold1225: 305688-324676 Capsella grandiflora
Cagra.1225s0090 10.0kb downstream 10.0kb downstream 10000 false Scaffold1225: 314677-324676 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380948 5261 Brassicaceae View MSA
123835711 5264 Brassicales-Malvales View MSA
124345073 5266 SBM View MSA
124241878 5268 Malvidae View MSA
124073724 5270 Rosid View MSA
123753708 5271 Pentapetalae View MSA
122789807 5272 Eudicot View MSA
122044017 5273 Angiosperm View MSA
121347327 5274 Embryophyte View MSA
123427490 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain