Gene : Cagra.1202s0009 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11946:SF89 - METHIONYL-TRNA SYNTHETASE Genomic Order:  9
Name:  ? Cagra.1202s0009 Secondary Identifier:  ? PAC:28910219
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1202s0009 0.5kb upstream 0.5kb upstream 3923 true Scaffold1202: 32296-36218 Capsella grandiflora
Cagra.1202s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold1202: 32296-32795 Capsella grandiflora
Cagra.1202s0009 0.5kb downstream 0.5kb downstream 3923 true Scaffold1202: 32796-36718 Capsella grandiflora
Cagra.1202s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold1202: 36219-36718 Capsella grandiflora
Cagra.1202s0009 1.0kb upstream 1.0kb upstream 4423 true Scaffold1202: 31796-36218 Capsella grandiflora
Cagra.1202s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold1202: 31796-32795 Capsella grandiflora
Cagra.1202s0009 1.0kb downstream 1.0kb downstream 4423 true Scaffold1202: 32796-37218 Capsella grandiflora
Cagra.1202s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold1202: 36219-37218 Capsella grandiflora
Cagra.1202s0009 2.0kb upstream 2.0kb upstream 5423 true Scaffold1202: 30796-36218 Capsella grandiflora
Cagra.1202s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold1202: 30796-32795 Capsella grandiflora
Cagra.1202s0009 2.0kb downstream 2.0kb downstream 5423 true Scaffold1202: 32796-38218 Capsella grandiflora
Cagra.1202s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold1202: 36219-38218 Capsella grandiflora
Cagra.1202s0009 5.0kb upstream 5.0kb upstream 8423 true Scaffold1202: 27796-36218 Capsella grandiflora
Cagra.1202s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold1202: 27796-32795 Capsella grandiflora
Cagra.1202s0009 5.0kb downstream 5.0kb downstream 8423 true Scaffold1202: 32796-41218 Capsella grandiflora
Cagra.1202s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold1202: 36219-41218 Capsella grandiflora
Cagra.1202s0009 10.0kb upstream 10.0kb upstream 13423 true Scaffold1202: 22796-36218 Capsella grandiflora
Cagra.1202s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold1202: 22796-32795 Capsella grandiflora
Cagra.1202s0009 10.0kb downstream 10.0kb downstream 13423 true Scaffold1202: 32796-46218 Capsella grandiflora
Cagra.1202s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold1202: 36219-46218 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332402 5261 Brassicaceae Singleton cluster - no MSA
123773477 5264 Brassicales-Malvales Singleton cluster - no MSA
124271959 5266 SBM Singleton cluster - no MSA
124127880 5268 Malvidae Singleton cluster - no MSA
124065458 5270 Rosid View MSA
123752968 5271 Pentapetalae View MSA
122787831 5272 Eudicot View MSA
122046373 5273 Angiosperm View MSA
121347151 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain