Gene : Cagra.1508s0041 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13069:SF8 - 2-OXOGLUTARATE AND FE-DEPENDENT OXYGENASE FAMILY PROTEIN Genomic Order:  41
Name:  ? Cagra.1508s0041 Secondary Identifier:  ? PAC:28905782
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6829 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1508s0041 0.5kb upstream 0.5kb upstream 2547 true Scaffold1508: 178622-181168 Capsella grandiflora
Cagra.1508s0041 0.5kb upstream 0.5kb upstream 500 false Scaffold1508: 178622-179121 Capsella grandiflora
Cagra.1508s0041 0.5kb downstream 0.5kb downstream 2547 true Scaffold1508: 179122-181668 Capsella grandiflora
Cagra.1508s0041 0.5kb downstream 0.5kb downstream 500 false Scaffold1508: 181169-181668 Capsella grandiflora
Cagra.1508s0041 1.0kb upstream 1.0kb upstream 3047 true Scaffold1508: 178122-181168 Capsella grandiflora
Cagra.1508s0041 1.0kb upstream 1.0kb upstream 1000 false Scaffold1508: 178122-179121 Capsella grandiflora
Cagra.1508s0041 1.0kb downstream 1.0kb downstream 3047 true Scaffold1508: 179122-182168 Capsella grandiflora
Cagra.1508s0041 1.0kb downstream 1.0kb downstream 1000 false Scaffold1508: 181169-182168 Capsella grandiflora
Cagra.1508s0041 2.0kb upstream 2.0kb upstream 4047 true Scaffold1508: 177122-181168 Capsella grandiflora
Cagra.1508s0041 2.0kb upstream 2.0kb upstream 2000 false Scaffold1508: 177122-179121 Capsella grandiflora
Cagra.1508s0041 2.0kb downstream 2.0kb downstream 4047 true Scaffold1508: 179122-183168 Capsella grandiflora
Cagra.1508s0041 2.0kb downstream 2.0kb downstream 2000 false Scaffold1508: 181169-183168 Capsella grandiflora
Cagra.1508s0041 5.0kb upstream 5.0kb upstream 7047 true Scaffold1508: 174122-181168 Capsella grandiflora
Cagra.1508s0041 5.0kb upstream 5.0kb upstream 5000 false Scaffold1508: 174122-179121 Capsella grandiflora
Cagra.1508s0041 5.0kb downstream 5.0kb downstream 7047 true Scaffold1508: 179122-186168 Capsella grandiflora
Cagra.1508s0041 5.0kb downstream 5.0kb downstream 5000 false Scaffold1508: 181169-186168 Capsella grandiflora
Cagra.1508s0041 10.0kb upstream 10.0kb upstream 12047 true Scaffold1508: 169122-181168 Capsella grandiflora
Cagra.1508s0041 10.0kb upstream 10.0kb upstream 10000 false Scaffold1508: 169122-179121 Capsella grandiflora
Cagra.1508s0041 10.0kb downstream 10.0kb downstream 12047 true Scaffold1508: 179122-191168 Capsella grandiflora
Cagra.1508s0041 10.0kb downstream 10.0kb downstream 10000 false Scaffold1508: 181169-191168 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368205 5261 Brassicaceae View MSA
123836574 5264 Brassicales-Malvales View MSA
124322185 5266 SBM View MSA
124242136 5268 Malvidae View MSA
124068599 5270 Rosid View MSA
123740892 5271 Pentapetalae View MSA
122793671 5272 Eudicot View MSA
122046991 5273 Angiosperm View MSA
121347521 5274 Embryophyte View MSA
123425237 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain