Gene : Cagra.1508s0079 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23089:SF3 - HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1 Genomic Order:  79
Name:  ? Cagra.1508s0079 Secondary Identifier:  ? PAC:28905801
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1508s0079 0.5kb upstream 0.5kb upstream 2310 true Scaffold1508: 327811-330120 Capsella grandiflora
Cagra.1508s0079 0.5kb upstream 0.5kb upstream 500 false Scaffold1508: 327811-328310 Capsella grandiflora
Cagra.1508s0079 0.5kb downstream 0.5kb downstream 2310 true Scaffold1508: 328311-330620 Capsella grandiflora
Cagra.1508s0079 0.5kb downstream 0.5kb downstream 500 false Scaffold1508: 330121-330620 Capsella grandiflora
Cagra.1508s0079 1.0kb upstream 1.0kb upstream 2810 true Scaffold1508: 327311-330120 Capsella grandiflora
Cagra.1508s0079 1.0kb upstream 1.0kb upstream 1000 false Scaffold1508: 327311-328310 Capsella grandiflora
Cagra.1508s0079 1.0kb downstream 1.0kb downstream 2810 true Scaffold1508: 328311-331120 Capsella grandiflora
Cagra.1508s0079 1.0kb downstream 1.0kb downstream 1000 false Scaffold1508: 330121-331120 Capsella grandiflora
Cagra.1508s0079 2.0kb upstream 2.0kb upstream 3810 true Scaffold1508: 326311-330120 Capsella grandiflora
Cagra.1508s0079 2.0kb upstream 2.0kb upstream 2000 false Scaffold1508: 326311-328310 Capsella grandiflora
Cagra.1508s0079 2.0kb downstream 2.0kb downstream 3810 true Scaffold1508: 328311-332120 Capsella grandiflora
Cagra.1508s0079 2.0kb downstream 2.0kb downstream 2000 false Scaffold1508: 330121-332120 Capsella grandiflora
Cagra.1508s0079 5.0kb upstream 5.0kb upstream 6810 true Scaffold1508: 323311-330120 Capsella grandiflora
Cagra.1508s0079 5.0kb upstream 5.0kb upstream 5000 false Scaffold1508: 323311-328310 Capsella grandiflora
Cagra.1508s0079 5.0kb downstream 5.0kb downstream 6810 true Scaffold1508: 328311-335120 Capsella grandiflora
Cagra.1508s0079 5.0kb downstream 5.0kb downstream 5000 false Scaffold1508: 330121-335120 Capsella grandiflora
Cagra.1508s0079 10.0kb upstream 10.0kb upstream 11810 true Scaffold1508: 318311-330120 Capsella grandiflora
Cagra.1508s0079 10.0kb upstream 10.0kb upstream 10000 false Scaffold1508: 318311-328310 Capsella grandiflora
Cagra.1508s0079 10.0kb downstream 10.0kb downstream 11810 true Scaffold1508: 328311-340120 Capsella grandiflora
Cagra.1508s0079 10.0kb downstream 10.0kb downstream 10000 false Scaffold1508: 330121-340120 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362572 5261 Brassicaceae View MSA
123831258 5264 Brassicales-Malvales View MSA
124342451 5266 SBM View MSA
124238678 5268 Malvidae View MSA
124063268 5270 Rosid View MSA
123738121 5271 Pentapetalae View MSA
122789246 5272 Eudicot View MSA
122042822 5273 Angiosperm View MSA
121347396 5274 Embryophyte View MSA
123425482 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain