Gene : Cagra.1504s0022 C. grandiflora v1.1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF64 - X-BOX TRANSCRIPTION FACTOR-RELATED Genomic Order:  22
Name:  ? Cagra.1504s0022 Secondary Identifier:  ? PAC:28910262
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1001 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1504s0022 0.5kb upstream 0.5kb upstream 5814 true Scaffold1504: 75164-80977 Capsella grandiflora
Cagra.1504s0022 0.5kb upstream 0.5kb upstream 500 false Scaffold1504: 80478-80977 Capsella grandiflora
Cagra.1504s0022 0.5kb downstream 0.5kb downstream 5814 true Scaffold1504: 74664-80477 Capsella grandiflora
Cagra.1504s0022 0.5kb downstream 0.5kb downstream 500 false Scaffold1504: 74664-75163 Capsella grandiflora
Cagra.1504s0022 1.0kb upstream 1.0kb upstream 6314 true Scaffold1504: 75164-81477 Capsella grandiflora
Cagra.1504s0022 1.0kb upstream 1.0kb upstream 1000 false Scaffold1504: 80478-81477 Capsella grandiflora
Cagra.1504s0022 1.0kb downstream 1.0kb downstream 6314 true Scaffold1504: 74164-80477 Capsella grandiflora
Cagra.1504s0022 1.0kb downstream 1.0kb downstream 1000 false Scaffold1504: 74164-75163 Capsella grandiflora
Cagra.1504s0022 2.0kb upstream 2.0kb upstream 7314 true Scaffold1504: 75164-82477 Capsella grandiflora
Cagra.1504s0022 2.0kb upstream 2.0kb upstream 2000 false Scaffold1504: 80478-82477 Capsella grandiflora
Cagra.1504s0022 2.0kb downstream 2.0kb downstream 7314 true Scaffold1504: 73164-80477 Capsella grandiflora
Cagra.1504s0022 2.0kb downstream 2.0kb downstream 2000 false Scaffold1504: 73164-75163 Capsella grandiflora
Cagra.1504s0022 5.0kb upstream 5.0kb upstream 10314 true Scaffold1504: 75164-85477 Capsella grandiflora
Cagra.1504s0022 5.0kb upstream 5.0kb upstream 5000 false Scaffold1504: 80478-85477 Capsella grandiflora
Cagra.1504s0022 5.0kb downstream 5.0kb downstream 10314 true Scaffold1504: 70164-80477 Capsella grandiflora
Cagra.1504s0022 5.0kb downstream 5.0kb downstream 5000 false Scaffold1504: 70164-75163 Capsella grandiflora
Cagra.1504s0022 10.0kb upstream 10.0kb upstream 15314 true Scaffold1504: 75164-90477 Capsella grandiflora
Cagra.1504s0022 10.0kb upstream 10.0kb upstream 10000 false Scaffold1504: 80478-90477 Capsella grandiflora
Cagra.1504s0022 10.0kb downstream 10.0kb downstream 15314 true Scaffold1504: 65164-80477 Capsella grandiflora
Cagra.1504s0022 10.0kb downstream 10.0kb downstream 10000 false Scaffold1504: 65164-75163 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366565 5261 Brassicaceae View MSA
123829715 5264 Brassicales-Malvales View MSA
124350218 5266 SBM View MSA
124240162 5268 Malvidae View MSA
124068602 5270 Rosid View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain