Gene : Cagra.1399s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR20275:SF0 - ATP-NADH KINASE YEF1-RELATED Genomic Order:  5
Name:  ? Cagra.1399s0005 Secondary Identifier:  ? PAC:28918519
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5083 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1399s0005 0.5kb upstream 0.5kb upstream 4519 true Scaffold1399: 24174-28692 Capsella grandiflora
Cagra.1399s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold1399: 28193-28692 Capsella grandiflora
Cagra.1399s0005 0.5kb downstream 0.5kb downstream 4519 true Scaffold1399: 23674-28192 Capsella grandiflora
Cagra.1399s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold1399: 23674-24173 Capsella grandiflora
Cagra.1399s0005 1.0kb upstream 1.0kb upstream 5019 true Scaffold1399: 24174-29192 Capsella grandiflora
Cagra.1399s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold1399: 28193-29192 Capsella grandiflora
Cagra.1399s0005 1.0kb downstream 1.0kb downstream 5019 true Scaffold1399: 23174-28192 Capsella grandiflora
Cagra.1399s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold1399: 23174-24173 Capsella grandiflora
Cagra.1399s0005 2.0kb upstream 2.0kb upstream 6019 true Scaffold1399: 24174-30192 Capsella grandiflora
Cagra.1399s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold1399: 28193-30192 Capsella grandiflora
Cagra.1399s0005 2.0kb downstream 2.0kb downstream 6019 true Scaffold1399: 22174-28192 Capsella grandiflora
Cagra.1399s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold1399: 22174-24173 Capsella grandiflora
Cagra.1399s0005 5.0kb upstream 5.0kb upstream 9019 true Scaffold1399: 24174-33192 Capsella grandiflora
Cagra.1399s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold1399: 28193-33192 Capsella grandiflora
Cagra.1399s0005 5.0kb downstream 5.0kb downstream 9019 true Scaffold1399: 19174-28192 Capsella grandiflora
Cagra.1399s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold1399: 19174-24173 Capsella grandiflora
Cagra.1399s0005 10.0kb upstream 10.0kb upstream 14019 true Scaffold1399: 24174-38192 Capsella grandiflora
Cagra.1399s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold1399: 28193-38192 Capsella grandiflora
Cagra.1399s0005 10.0kb downstream 10.0kb downstream 14019 true Scaffold1399: 14174-28192 Capsella grandiflora
Cagra.1399s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold1399: 14174-24173 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379688 5261 Brassicaceae View MSA
123838128 5264 Brassicales-Malvales View MSA
124336611 5266 SBM View MSA
124238337 5268 Malvidae View MSA
124071172 5270 Rosid View MSA
123745020 5271 Pentapetalae View MSA
122792103 5272 Eudicot View MSA
122043063 5273 Angiosperm View MSA
121344083 5274 Embryophyte View MSA
123427357 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain