Gene : Cagra.1390s0032 C. grandiflora v1.1
Defline:  (1 of 6) PTHR12346:SF8 - PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 1-RELATED Genomic Order:  32
Name:  ? Cagra.1390s0032 Secondary Identifier:  ? PAC:28907328
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1390s0032 0.5kb upstream 0.5kb upstream 7938 true Scaffold1390: 93938-101875 Capsella grandiflora
Cagra.1390s0032 0.5kb upstream 0.5kb upstream 500 false Scaffold1390: 93938-94437 Capsella grandiflora
Cagra.1390s0032 0.5kb downstream 0.5kb downstream 7938 true Scaffold1390: 94438-102375 Capsella grandiflora
Cagra.1390s0032 0.5kb downstream 0.5kb downstream 500 false Scaffold1390: 101876-102375 Capsella grandiflora
Cagra.1390s0032 1.0kb upstream 1.0kb upstream 8438 true Scaffold1390: 93438-101875 Capsella grandiflora
Cagra.1390s0032 1.0kb upstream 1.0kb upstream 1000 false Scaffold1390: 93438-94437 Capsella grandiflora
Cagra.1390s0032 1.0kb downstream 1.0kb downstream 8438 true Scaffold1390: 94438-102875 Capsella grandiflora
Cagra.1390s0032 1.0kb downstream 1.0kb downstream 1000 false Scaffold1390: 101876-102875 Capsella grandiflora
Cagra.1390s0032 2.0kb upstream 2.0kb upstream 9438 true Scaffold1390: 92438-101875 Capsella grandiflora
Cagra.1390s0032 2.0kb upstream 2.0kb upstream 2000 false Scaffold1390: 92438-94437 Capsella grandiflora
Cagra.1390s0032 2.0kb downstream 2.0kb downstream 9438 true Scaffold1390: 94438-103875 Capsella grandiflora
Cagra.1390s0032 2.0kb downstream 2.0kb downstream 2000 false Scaffold1390: 101876-103875 Capsella grandiflora
Cagra.1390s0032 5.0kb upstream 5.0kb upstream 12438 true Scaffold1390: 89438-101875 Capsella grandiflora
Cagra.1390s0032 5.0kb upstream 5.0kb upstream 5000 false Scaffold1390: 89438-94437 Capsella grandiflora
Cagra.1390s0032 5.0kb downstream 5.0kb downstream 12438 true Scaffold1390: 94438-106875 Capsella grandiflora
Cagra.1390s0032 5.0kb downstream 5.0kb downstream 5000 false Scaffold1390: 101876-106875 Capsella grandiflora
Cagra.1390s0032 10.0kb upstream 10.0kb upstream 17438 true Scaffold1390: 84438-101875 Capsella grandiflora
Cagra.1390s0032 10.0kb upstream 10.0kb upstream 10000 false Scaffold1390: 84438-94437 Capsella grandiflora
Cagra.1390s0032 10.0kb downstream 10.0kb downstream 14676 true Scaffold1390: 94438-109113 Capsella grandiflora
Cagra.1390s0032 10.0kb downstream 10.0kb downstream 7238 false Scaffold1390: 101876-109113 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375094 5261 Brassicaceae View MSA
123839182 5264 Brassicales-Malvales View MSA
124351149 5266 SBM View MSA
124237292 5268 Malvidae View MSA
124072493 5270 Rosid View MSA
123752813 5271 Pentapetalae View MSA
122791038 5272 Eudicot View MSA
122047034 5273 Angiosperm View MSA
121346152 5274 Embryophyte View MSA
123428507 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain