Gene : Cagra.1378s0004 C. grandiflora v1.1
Defline:  (1 of 2) PTHR20852//PTHR20852:SF59 - GLUTAMINE SYNTHETASE Genomic Order:  4
Name:  ? Cagra.1378s0004 Secondary Identifier:  ? PAC:28903310
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLNSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3282 Capsella grandiflora pathologic  
Cgrandiflora PWY-381 Capsella grandiflora pathologic  
Cgrandiflora PWY-6549 Capsella grandiflora pathologic  
Cgrandiflora PWY-6963 Capsella grandiflora pathologic  
Cgrandiflora PWY-6964 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1378s0004 0.5kb upstream 0.5kb upstream 2735 true Scaffold1378: 16466-19200 Capsella grandiflora
Cagra.1378s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold1378: 18701-19200 Capsella grandiflora
Cagra.1378s0004 0.5kb downstream 0.5kb downstream 2735 true Scaffold1378: 15966-18700 Capsella grandiflora
Cagra.1378s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold1378: 15966-16465 Capsella grandiflora
Cagra.1378s0004 1.0kb upstream 1.0kb upstream 3235 true Scaffold1378: 16466-19700 Capsella grandiflora
Cagra.1378s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold1378: 18701-19700 Capsella grandiflora
Cagra.1378s0004 1.0kb downstream 1.0kb downstream 3235 true Scaffold1378: 15466-18700 Capsella grandiflora
Cagra.1378s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold1378: 15466-16465 Capsella grandiflora
Cagra.1378s0004 2.0kb upstream 2.0kb upstream 4235 true Scaffold1378: 16466-20700 Capsella grandiflora
Cagra.1378s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold1378: 18701-20700 Capsella grandiflora
Cagra.1378s0004 2.0kb downstream 2.0kb downstream 4235 true Scaffold1378: 14466-18700 Capsella grandiflora
Cagra.1378s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold1378: 14466-16465 Capsella grandiflora
Cagra.1378s0004 5.0kb upstream 5.0kb upstream 7235 true Scaffold1378: 16466-23700 Capsella grandiflora
Cagra.1378s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold1378: 18701-23700 Capsella grandiflora
Cagra.1378s0004 5.0kb downstream 5.0kb downstream 7235 true Scaffold1378: 11466-18700 Capsella grandiflora
Cagra.1378s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold1378: 11466-16465 Capsella grandiflora
Cagra.1378s0004 10.0kb upstream 10.0kb upstream 12235 true Scaffold1378: 16466-28700 Capsella grandiflora
Cagra.1378s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold1378: 18701-28700 Capsella grandiflora
Cagra.1378s0004 10.0kb downstream 10.0kb downstream 12235 true Scaffold1378: 6466-18700 Capsella grandiflora
Cagra.1378s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold1378: 6466-16465 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372915 5261 Brassicaceae View MSA
123800457 5264 Brassicales-Malvales View MSA
124297870 5266 SBM View MSA
124149654 5268 Malvidae View MSA
124072083 5270 Rosid View MSA
123746903 5271 Pentapetalae View MSA
122794697 5272 Eudicot View MSA
122048815 5273 Angiosperm View MSA
121347129 5274 Embryophyte View MSA
123428761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain