Gene : Cagra.1383s0032 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12001:SF41 - HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  32
Name:  ? Cagra.1383s0032 Secondary Identifier:  ? PAC:28901763
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5120 Capsella grandiflora pathologic  
Cgrandiflora PWY-5910 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1383s0032 0.5kb upstream 0.5kb upstream 1713 true Scaffold1383: 105246-106958 Capsella grandiflora
Cagra.1383s0032 0.5kb upstream 0.5kb upstream 500 false Scaffold1383: 105246-105745 Capsella grandiflora
Cagra.1383s0032 0.5kb downstream 0.5kb downstream 1713 true Scaffold1383: 105746-107458 Capsella grandiflora
Cagra.1383s0032 0.5kb downstream 0.5kb downstream 500 false Scaffold1383: 106959-107458 Capsella grandiflora
Cagra.1383s0032 1.0kb upstream 1.0kb upstream 2213 true Scaffold1383: 104746-106958 Capsella grandiflora
Cagra.1383s0032 1.0kb upstream 1.0kb upstream 1000 false Scaffold1383: 104746-105745 Capsella grandiflora
Cagra.1383s0032 1.0kb downstream 1.0kb downstream 2213 true Scaffold1383: 105746-107958 Capsella grandiflora
Cagra.1383s0032 1.0kb downstream 1.0kb downstream 1000 false Scaffold1383: 106959-107958 Capsella grandiflora
Cagra.1383s0032 2.0kb upstream 2.0kb upstream 3213 true Scaffold1383: 103746-106958 Capsella grandiflora
Cagra.1383s0032 2.0kb upstream 2.0kb upstream 2000 false Scaffold1383: 103746-105745 Capsella grandiflora
Cagra.1383s0032 2.0kb downstream 2.0kb downstream 3213 true Scaffold1383: 105746-108958 Capsella grandiflora
Cagra.1383s0032 2.0kb downstream 2.0kb downstream 2000 false Scaffold1383: 106959-108958 Capsella grandiflora
Cagra.1383s0032 5.0kb upstream 5.0kb upstream 6213 true Scaffold1383: 100746-106958 Capsella grandiflora
Cagra.1383s0032 5.0kb upstream 5.0kb upstream 5000 false Scaffold1383: 100746-105745 Capsella grandiflora
Cagra.1383s0032 5.0kb downstream 5.0kb downstream 6213 true Scaffold1383: 105746-111958 Capsella grandiflora
Cagra.1383s0032 5.0kb downstream 5.0kb downstream 5000 false Scaffold1383: 106959-111958 Capsella grandiflora
Cagra.1383s0032 10.0kb upstream 10.0kb upstream 11213 true Scaffold1383: 95746-106958 Capsella grandiflora
Cagra.1383s0032 10.0kb upstream 10.0kb upstream 10000 false Scaffold1383: 95746-105745 Capsella grandiflora
Cagra.1383s0032 10.0kb downstream 10.0kb downstream 11213 true Scaffold1383: 105746-116958 Capsella grandiflora
Cagra.1383s0032 10.0kb downstream 10.0kb downstream 10000 false Scaffold1383: 106959-116958 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371131 5261 Brassicaceae View MSA
123833321 5264 Brassicales-Malvales View MSA
124341620 5266 SBM View MSA
124238583 5268 Malvidae View MSA
124050179 5270 Rosid View MSA
123740099 5271 Pentapetalae View MSA
122794742 5272 Eudicot View MSA
122045849 5273 Angiosperm View MSA
121310516 5274 Embryophyte View MSA
123347979 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain