Gene : Cagra.1372s0006 C. grandiflora v1.1
Defline:  (1 of 4) PTHR23086:SF33 - PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 1-RELATED Genomic Order:  6
Name:  ? Cagra.1372s0006 Secondary Identifier:  ? PAC:28907342
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6351 Capsella grandiflora pathologic  
Cgrandiflora PWY-6352 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1372s0006 0.5kb upstream 0.5kb upstream 2502 true Scaffold1372: 12698-15199 Capsella grandiflora
Cagra.1372s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold1372: 12698-13197 Capsella grandiflora
Cagra.1372s0006 0.5kb downstream 0.5kb downstream 2502 true Scaffold1372: 13198-15699 Capsella grandiflora
Cagra.1372s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold1372: 15200-15699 Capsella grandiflora
Cagra.1372s0006 1.0kb upstream 1.0kb upstream 3002 true Scaffold1372: 12198-15199 Capsella grandiflora
Cagra.1372s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold1372: 12198-13197 Capsella grandiflora
Cagra.1372s0006 1.0kb downstream 1.0kb downstream 3002 true Scaffold1372: 13198-16199 Capsella grandiflora
Cagra.1372s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold1372: 15200-16199 Capsella grandiflora
Cagra.1372s0006 2.0kb upstream 2.0kb upstream 4002 true Scaffold1372: 11198-15199 Capsella grandiflora
Cagra.1372s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold1372: 11198-13197 Capsella grandiflora
Cagra.1372s0006 2.0kb downstream 2.0kb downstream 4002 true Scaffold1372: 13198-17199 Capsella grandiflora
Cagra.1372s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold1372: 15200-17199 Capsella grandiflora
Cagra.1372s0006 5.0kb upstream 5.0kb upstream 7002 true Scaffold1372: 8198-15199 Capsella grandiflora
Cagra.1372s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold1372: 8198-13197 Capsella grandiflora
Cagra.1372s0006 5.0kb downstream 5.0kb downstream 7002 true Scaffold1372: 13198-20199 Capsella grandiflora
Cagra.1372s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold1372: 15200-20199 Capsella grandiflora
Cagra.1372s0006 10.0kb upstream 10.0kb upstream 12002 true Scaffold1372: 3198-15199 Capsella grandiflora
Cagra.1372s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold1372: 3198-13197 Capsella grandiflora
Cagra.1372s0006 10.0kb downstream 10.0kb downstream 12002 true Scaffold1372: 13198-25199 Capsella grandiflora
Cagra.1372s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold1372: 15200-25199 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027967 5273 Angiosperm View MSA
122371912 5261 Brassicaceae View MSA
123800257 5264 Brassicales-Malvales View MSA
124297693 5266 SBM View MSA
124250315 5268 Malvidae View MSA
124037204 5270 Rosid View MSA
123741083 5271 Pentapetalae View MSA
122791627 5272 Eudicot View MSA
121349579 5274 Embryophyte View MSA
123428114 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain