Gene : Cagra.1361s0058 C. grandiflora v1.1
Defline:  (1 of 10) KOG1100 - Predicted E3 ubiquitin ligase Genomic Order:  58
Name:  ? Cagra.1361s0058 Secondary Identifier:  ? PAC:28915540
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1361s0058 0.5kb upstream 0.5kb upstream 2089 true Scaffold1361: 206439-208527 Capsella grandiflora
Cagra.1361s0058 0.5kb upstream 0.5kb upstream 500 false Scaffold1361: 206439-206938 Capsella grandiflora
Cagra.1361s0058 0.5kb downstream 0.5kb downstream 2089 true Scaffold1361: 206939-209027 Capsella grandiflora
Cagra.1361s0058 0.5kb downstream 0.5kb downstream 500 false Scaffold1361: 208528-209027 Capsella grandiflora
Cagra.1361s0058 1.0kb upstream 1.0kb upstream 2589 true Scaffold1361: 205939-208527 Capsella grandiflora
Cagra.1361s0058 1.0kb upstream 1.0kb upstream 1000 false Scaffold1361: 205939-206938 Capsella grandiflora
Cagra.1361s0058 1.0kb downstream 1.0kb downstream 2589 true Scaffold1361: 206939-209527 Capsella grandiflora
Cagra.1361s0058 1.0kb downstream 1.0kb downstream 1000 false Scaffold1361: 208528-209527 Capsella grandiflora
Cagra.1361s0058 2.0kb upstream 2.0kb upstream 3589 true Scaffold1361: 204939-208527 Capsella grandiflora
Cagra.1361s0058 2.0kb upstream 2.0kb upstream 2000 false Scaffold1361: 204939-206938 Capsella grandiflora
Cagra.1361s0058 2.0kb downstream 2.0kb downstream 3589 true Scaffold1361: 206939-210527 Capsella grandiflora
Cagra.1361s0058 2.0kb downstream 2.0kb downstream 2000 false Scaffold1361: 208528-210527 Capsella grandiflora
Cagra.1361s0058 5.0kb upstream 5.0kb upstream 6589 true Scaffold1361: 201939-208527 Capsella grandiflora
Cagra.1361s0058 5.0kb upstream 5.0kb upstream 5000 false Scaffold1361: 201939-206938 Capsella grandiflora
Cagra.1361s0058 5.0kb downstream 5.0kb downstream 6589 true Scaffold1361: 206939-213527 Capsella grandiflora
Cagra.1361s0058 5.0kb downstream 5.0kb downstream 5000 false Scaffold1361: 208528-213527 Capsella grandiflora
Cagra.1361s0058 10.0kb upstream 10.0kb upstream 11589 true Scaffold1361: 196939-208527 Capsella grandiflora
Cagra.1361s0058 10.0kb upstream 10.0kb upstream 10000 false Scaffold1361: 196939-206938 Capsella grandiflora
Cagra.1361s0058 10.0kb downstream 10.0kb downstream 11589 true Scaffold1361: 206939-218527 Capsella grandiflora
Cagra.1361s0058 10.0kb downstream 10.0kb downstream 10000 false Scaffold1361: 208528-218527 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365157 5261 Brassicaceae View MSA
123837384 5264 Brassicales-Malvales View MSA
124345958 5266 SBM View MSA
124243866 5268 Malvidae View MSA
124065052 5270 Rosid View MSA
123752259 5271 Pentapetalae View MSA
122794971 5272 Eudicot View MSA
122050089 5273 Angiosperm View MSA
121348016 5274 Embryophyte View MSA
123380706 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain