Gene : Cagra.1636s0011 C. grandiflora v1.1
Defline:  (1 of 2) PTHR12396:SF10 - METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  11
Name:  ? Cagra.1636s0011 Secondary Identifier:  ? PAC:28903987
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1636s0011 0.5kb upstream 0.5kb upstream 1643 true Scaffold1636: 32991-34633 Capsella grandiflora
Cagra.1636s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold1636: 32991-33490 Capsella grandiflora
Cagra.1636s0011 0.5kb downstream 0.5kb downstream 1643 true Scaffold1636: 33491-35133 Capsella grandiflora
Cagra.1636s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold1636: 34634-35133 Capsella grandiflora
Cagra.1636s0011 1.0kb upstream 1.0kb upstream 2143 true Scaffold1636: 32491-34633 Capsella grandiflora
Cagra.1636s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold1636: 32491-33490 Capsella grandiflora
Cagra.1636s0011 1.0kb downstream 1.0kb downstream 2143 true Scaffold1636: 33491-35633 Capsella grandiflora
Cagra.1636s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold1636: 34634-35633 Capsella grandiflora
Cagra.1636s0011 2.0kb upstream 2.0kb upstream 3143 true Scaffold1636: 31491-34633 Capsella grandiflora
Cagra.1636s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold1636: 31491-33490 Capsella grandiflora
Cagra.1636s0011 2.0kb downstream 2.0kb downstream 3143 true Scaffold1636: 33491-36633 Capsella grandiflora
Cagra.1636s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold1636: 34634-36633 Capsella grandiflora
Cagra.1636s0011 5.0kb upstream 5.0kb upstream 6143 true Scaffold1636: 28491-34633 Capsella grandiflora
Cagra.1636s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold1636: 28491-33490 Capsella grandiflora
Cagra.1636s0011 5.0kb downstream 5.0kb downstream 6143 true Scaffold1636: 33491-39633 Capsella grandiflora
Cagra.1636s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold1636: 34634-39633 Capsella grandiflora
Cagra.1636s0011 10.0kb upstream 10.0kb upstream 11143 true Scaffold1636: 23491-34633 Capsella grandiflora
Cagra.1636s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold1636: 23491-33490 Capsella grandiflora
Cagra.1636s0011 10.0kb downstream 10.0kb downstream 11143 true Scaffold1636: 33491-44633 Capsella grandiflora
Cagra.1636s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold1636: 34634-44633 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375523 5261 Brassicaceae View MSA
123800982 5264 Brassicales-Malvales View MSA
124298331 5266 SBM View MSA
124250130 5268 Malvidae View MSA
124061100 5270 Rosid View MSA
123741476 5271 Pentapetalae View MSA
122793205 5272 Eudicot View MSA
122043544 5273 Angiosperm View MSA
121310145 5274 Embryophyte View MSA
123347714 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain