Gene : Cagra.1642s0031 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11586:SF1 - NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN Genomic Order:  31
Name:  ? Cagra.1642s0031 Secondary Identifier:  ? PAC:28898846
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1642s0031 0.5kb upstream 0.5kb upstream 3604 true Scaffold1642: 97565-101168 Capsella grandiflora
Cagra.1642s0031 0.5kb upstream 0.5kb upstream 500 false Scaffold1642: 97565-98064 Capsella grandiflora
Cagra.1642s0031 0.5kb downstream 0.5kb downstream 3604 true Scaffold1642: 98065-101668 Capsella grandiflora
Cagra.1642s0031 0.5kb downstream 0.5kb downstream 500 false Scaffold1642: 101169-101668 Capsella grandiflora
Cagra.1642s0031 1.0kb upstream 1.0kb upstream 4104 true Scaffold1642: 97065-101168 Capsella grandiflora
Cagra.1642s0031 1.0kb upstream 1.0kb upstream 1000 false Scaffold1642: 97065-98064 Capsella grandiflora
Cagra.1642s0031 1.0kb downstream 1.0kb downstream 4104 true Scaffold1642: 98065-102168 Capsella grandiflora
Cagra.1642s0031 1.0kb downstream 1.0kb downstream 1000 false Scaffold1642: 101169-102168 Capsella grandiflora
Cagra.1642s0031 2.0kb upstream 2.0kb upstream 5104 true Scaffold1642: 96065-101168 Capsella grandiflora
Cagra.1642s0031 2.0kb upstream 2.0kb upstream 2000 false Scaffold1642: 96065-98064 Capsella grandiflora
Cagra.1642s0031 2.0kb downstream 2.0kb downstream 5104 true Scaffold1642: 98065-103168 Capsella grandiflora
Cagra.1642s0031 2.0kb downstream 2.0kb downstream 2000 false Scaffold1642: 101169-103168 Capsella grandiflora
Cagra.1642s0031 5.0kb upstream 5.0kb upstream 8104 true Scaffold1642: 93065-101168 Capsella grandiflora
Cagra.1642s0031 5.0kb upstream 5.0kb upstream 5000 false Scaffold1642: 93065-98064 Capsella grandiflora
Cagra.1642s0031 5.0kb downstream 5.0kb downstream 8104 true Scaffold1642: 98065-106168 Capsella grandiflora
Cagra.1642s0031 5.0kb downstream 5.0kb downstream 5000 false Scaffold1642: 101169-106168 Capsella grandiflora
Cagra.1642s0031 10.0kb upstream 10.0kb upstream 13104 true Scaffold1642: 88065-101168 Capsella grandiflora
Cagra.1642s0031 10.0kb upstream 10.0kb upstream 10000 false Scaffold1642: 88065-98064 Capsella grandiflora
Cagra.1642s0031 10.0kb downstream 10.0kb downstream 13104 true Scaffold1642: 98065-111168 Capsella grandiflora
Cagra.1642s0031 10.0kb downstream 10.0kb downstream 10000 false Scaffold1642: 101169-111168 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372616 5261 Brassicaceae View MSA
123838875 5264 Brassicales-Malvales View MSA
124339566 5266 SBM View MSA
124237749 5268 Malvidae View MSA
124063262 5270 Rosid View MSA
123740350 5271 Pentapetalae View MSA
122787501 5272 Eudicot View MSA
122043552 5273 Angiosperm View MSA
121350669 5274 Embryophyte View MSA
123427531 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain