Gene : Cagra.1629s0043 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13268:SF1 - AUTOPHAGY-RELATED PROTEIN 18F Genomic Order:  43
Name:  ? Cagra.1629s0043 Secondary Identifier:  ? PAC:28912701
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1629s0043 0.5kb upstream 0.5kb upstream 4306 true Scaffold1629: 223641-227946 Capsella grandiflora
Cagra.1629s0043 0.5kb upstream 0.5kb upstream 500 false Scaffold1629: 227447-227946 Capsella grandiflora
Cagra.1629s0043 0.5kb downstream 0.5kb downstream 4306 true Scaffold1629: 223141-227446 Capsella grandiflora
Cagra.1629s0043 0.5kb downstream 0.5kb downstream 500 false Scaffold1629: 223141-223640 Capsella grandiflora
Cagra.1629s0043 1.0kb upstream 1.0kb upstream 4806 true Scaffold1629: 223641-228446 Capsella grandiflora
Cagra.1629s0043 1.0kb upstream 1.0kb upstream 1000 false Scaffold1629: 227447-228446 Capsella grandiflora
Cagra.1629s0043 1.0kb downstream 1.0kb downstream 4806 true Scaffold1629: 222641-227446 Capsella grandiflora
Cagra.1629s0043 1.0kb downstream 1.0kb downstream 1000 false Scaffold1629: 222641-223640 Capsella grandiflora
Cagra.1629s0043 2.0kb upstream 2.0kb upstream 5806 true Scaffold1629: 223641-229446 Capsella grandiflora
Cagra.1629s0043 2.0kb upstream 2.0kb upstream 2000 false Scaffold1629: 227447-229446 Capsella grandiflora
Cagra.1629s0043 2.0kb downstream 2.0kb downstream 5806 true Scaffold1629: 221641-227446 Capsella grandiflora
Cagra.1629s0043 2.0kb downstream 2.0kb downstream 2000 false Scaffold1629: 221641-223640 Capsella grandiflora
Cagra.1629s0043 5.0kb upstream 5.0kb upstream 8806 true Scaffold1629: 223641-232446 Capsella grandiflora
Cagra.1629s0043 5.0kb upstream 5.0kb upstream 5000 false Scaffold1629: 227447-232446 Capsella grandiflora
Cagra.1629s0043 5.0kb downstream 5.0kb downstream 8806 true Scaffold1629: 218641-227446 Capsella grandiflora
Cagra.1629s0043 5.0kb downstream 5.0kb downstream 5000 false Scaffold1629: 218641-223640 Capsella grandiflora
Cagra.1629s0043 10.0kb upstream 10.0kb upstream 13806 true Scaffold1629: 223641-237446 Capsella grandiflora
Cagra.1629s0043 10.0kb upstream 10.0kb upstream 10000 false Scaffold1629: 227447-237446 Capsella grandiflora
Cagra.1629s0043 10.0kb downstream 10.0kb downstream 13806 true Scaffold1629: 213641-227446 Capsella grandiflora
Cagra.1629s0043 10.0kb downstream 10.0kb downstream 10000 false Scaffold1629: 213641-223640 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362831 5261 Brassicaceae View MSA
123835786 5264 Brassicales-Malvales View MSA
124339182 5266 SBM View MSA
124241657 5268 Malvidae View MSA
124067149 5270 Rosid View MSA
123741778 5271 Pentapetalae View MSA
122794061 5272 Eudicot View MSA
122048367 5273 Angiosperm View MSA
121350059 5274 Embryophyte View MSA
123424091 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain