Gene : Cagra.1626s0025 C. grandiflora v1.1
Defline:  (1 of 1) PTHR30239:SF3 - ACETOLACTATE SYNTHASE SMALL SUBUNIT 2, CHLOROPLASTIC Genomic Order:  25
Name:  ? Cagra.1626s0025 Secondary Identifier:  ? PAC:28904417
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora BRANCHED-CHAIN-AA-SYN-PWY Capsella grandiflora pathologic  
Cgrandiflora ILEUSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3001 Capsella grandiflora pathologic  
Cgrandiflora VALSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1626s0025 0.5kb upstream 0.5kb upstream 5157 true Scaffold1626: 92463-97619 Capsella grandiflora
Cagra.1626s0025 0.5kb upstream 0.5kb upstream 500 false Scaffold1626: 92463-92962 Capsella grandiflora
Cagra.1626s0025 0.5kb downstream 0.5kb downstream 5157 true Scaffold1626: 92963-98119 Capsella grandiflora
Cagra.1626s0025 0.5kb downstream 0.5kb downstream 500 false Scaffold1626: 97620-98119 Capsella grandiflora
Cagra.1626s0025 1.0kb upstream 1.0kb upstream 5657 true Scaffold1626: 91963-97619 Capsella grandiflora
Cagra.1626s0025 1.0kb upstream 1.0kb upstream 1000 false Scaffold1626: 91963-92962 Capsella grandiflora
Cagra.1626s0025 1.0kb downstream 1.0kb downstream 5657 true Scaffold1626: 92963-98619 Capsella grandiflora
Cagra.1626s0025 1.0kb downstream 1.0kb downstream 1000 false Scaffold1626: 97620-98619 Capsella grandiflora
Cagra.1626s0025 2.0kb upstream 2.0kb upstream 6657 true Scaffold1626: 90963-97619 Capsella grandiflora
Cagra.1626s0025 2.0kb upstream 2.0kb upstream 2000 false Scaffold1626: 90963-92962 Capsella grandiflora
Cagra.1626s0025 2.0kb downstream 2.0kb downstream 6657 true Scaffold1626: 92963-99619 Capsella grandiflora
Cagra.1626s0025 2.0kb downstream 2.0kb downstream 2000 false Scaffold1626: 97620-99619 Capsella grandiflora
Cagra.1626s0025 5.0kb upstream 5.0kb upstream 9657 true Scaffold1626: 87963-97619 Capsella grandiflora
Cagra.1626s0025 5.0kb upstream 5.0kb upstream 5000 false Scaffold1626: 87963-92962 Capsella grandiflora
Cagra.1626s0025 5.0kb downstream 5.0kb downstream 9657 true Scaffold1626: 92963-102619 Capsella grandiflora
Cagra.1626s0025 5.0kb downstream 5.0kb downstream 5000 false Scaffold1626: 97620-102619 Capsella grandiflora
Cagra.1626s0025 10.0kb upstream 10.0kb upstream 14657 true Scaffold1626: 82963-97619 Capsella grandiflora
Cagra.1626s0025 10.0kb upstream 10.0kb upstream 10000 false Scaffold1626: 82963-92962 Capsella grandiflora
Cagra.1626s0025 10.0kb downstream 10.0kb downstream 14657 true Scaffold1626: 92963-107619 Capsella grandiflora
Cagra.1626s0025 10.0kb downstream 10.0kb downstream 10000 false Scaffold1626: 97620-107619 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041401 5273 Angiosperm View MSA
122372730 5261 Brassicaceae View MSA
123828720 5264 Brassicales-Malvales View MSA
124341997 5266 SBM View MSA
124249637 5268 Malvidae View MSA
124071957 5270 Rosid View MSA
123740073 5271 Pentapetalae View MSA
122796860 5272 Eudicot View MSA
121347297 5274 Embryophyte View MSA
123426079 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain