Gene : Cagra.1595s0023 C. grandiflora v1.1

Defline:  (1 of 1) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  23
Name:  ? Cagra.1595s0023 Secondary Identifier:  ? PAC:28895478

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYCOGENSYNTH-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-622 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1595s0023 0.5kb upstream 0.5kb upstream 5755 true Scaffold1595: 89585-95339 Capsella grandiflora
Cagra.1595s0023 0.5kb upstream 0.5kb upstream 500 false Scaffold1595: 89585-90084 Capsella grandiflora
Cagra.1595s0023 0.5kb downstream 0.5kb downstream 5755 true Scaffold1595: 90085-95839 Capsella grandiflora
Cagra.1595s0023 0.5kb downstream 0.5kb downstream 500 false Scaffold1595: 95340-95839 Capsella grandiflora
Cagra.1595s0023 1.0kb upstream 1.0kb upstream 6255 true Scaffold1595: 89085-95339 Capsella grandiflora
Cagra.1595s0023 1.0kb upstream 1.0kb upstream 1000 false Scaffold1595: 89085-90084 Capsella grandiflora
Cagra.1595s0023 1.0kb downstream 1.0kb downstream 6255 true Scaffold1595: 90085-96339 Capsella grandiflora
Cagra.1595s0023 1.0kb downstream 1.0kb downstream 1000 false Scaffold1595: 95340-96339 Capsella grandiflora
Cagra.1595s0023 2.0kb upstream 2.0kb upstream 7255 true Scaffold1595: 88085-95339 Capsella grandiflora
Cagra.1595s0023 2.0kb upstream 2.0kb upstream 2000 false Scaffold1595: 88085-90084 Capsella grandiflora
Cagra.1595s0023 2.0kb downstream 2.0kb downstream 7255 true Scaffold1595: 90085-97339 Capsella grandiflora
Cagra.1595s0023 2.0kb downstream 2.0kb downstream 2000 false Scaffold1595: 95340-97339 Capsella grandiflora
Cagra.1595s0023 5.0kb upstream 5.0kb upstream 10255 true Scaffold1595: 85085-95339 Capsella grandiflora
Cagra.1595s0023 5.0kb upstream 5.0kb upstream 5000 false Scaffold1595: 85085-90084 Capsella grandiflora
Cagra.1595s0023 5.0kb downstream 5.0kb downstream 10255 true Scaffold1595: 90085-100339 Capsella grandiflora
Cagra.1595s0023 5.0kb downstream 5.0kb downstream 5000 false Scaffold1595: 95340-100339 Capsella grandiflora
Cagra.1595s0023 10.0kb upstream 10.0kb upstream 15255 true Scaffold1595: 80085-95339 Capsella grandiflora
Cagra.1595s0023 10.0kb upstream 10.0kb upstream 10000 false Scaffold1595: 80085-90084 Capsella grandiflora
Cagra.1595s0023 10.0kb downstream 10.0kb downstream 15255 true Scaffold1595: 90085-105339 Capsella grandiflora
Cagra.1595s0023 10.0kb downstream 10.0kb downstream 10000 false Scaffold1595: 95340-105339 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360271 5261 Brassicaceae View MSA
123829886 5264 Brassicales-Malvales View MSA
124343403 5266 SBM View MSA
124243663 5268 Malvidae View MSA
124062542 5270 Rosid View MSA
123737586 5271 Pentapetalae View MSA
122786746 5272 Eudicot View MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain