Gene : Cagra.1595s0024 C. grandiflora v1.1
Defline:  (1 of 6) PF00314//PF07714 - Thaumatin family (Thaumatin) // Protein tyrosine kinase (Pkinase_Tyr) Genomic Order:  24
Name:  ? Cagra.1595s0024 Secondary Identifier:  ? PAC:28895452
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7409 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1595s0024 0.5kb upstream 0.5kb upstream 3490 true Scaffold1595: 95396-98885 Capsella grandiflora
Cagra.1595s0024 0.5kb upstream 0.5kb upstream 500 false Scaffold1595: 98386-98885 Capsella grandiflora
Cagra.1595s0024 0.5kb downstream 0.5kb downstream 3490 true Scaffold1595: 94896-98385 Capsella grandiflora
Cagra.1595s0024 0.5kb downstream 0.5kb downstream 500 false Scaffold1595: 94896-95395 Capsella grandiflora
Cagra.1595s0024 1.0kb upstream 1.0kb upstream 3990 true Scaffold1595: 95396-99385 Capsella grandiflora
Cagra.1595s0024 1.0kb upstream 1.0kb upstream 1000 false Scaffold1595: 98386-99385 Capsella grandiflora
Cagra.1595s0024 1.0kb downstream 1.0kb downstream 3990 true Scaffold1595: 94396-98385 Capsella grandiflora
Cagra.1595s0024 1.0kb downstream 1.0kb downstream 1000 false Scaffold1595: 94396-95395 Capsella grandiflora
Cagra.1595s0024 2.0kb upstream 2.0kb upstream 4990 true Scaffold1595: 95396-100385 Capsella grandiflora
Cagra.1595s0024 2.0kb upstream 2.0kb upstream 2000 false Scaffold1595: 98386-100385 Capsella grandiflora
Cagra.1595s0024 2.0kb downstream 2.0kb downstream 4990 true Scaffold1595: 93396-98385 Capsella grandiflora
Cagra.1595s0024 2.0kb downstream 2.0kb downstream 2000 false Scaffold1595: 93396-95395 Capsella grandiflora
Cagra.1595s0024 5.0kb upstream 5.0kb upstream 7990 true Scaffold1595: 95396-103385 Capsella grandiflora
Cagra.1595s0024 5.0kb upstream 5.0kb upstream 5000 false Scaffold1595: 98386-103385 Capsella grandiflora
Cagra.1595s0024 5.0kb downstream 5.0kb downstream 7990 true Scaffold1595: 90396-98385 Capsella grandiflora
Cagra.1595s0024 5.0kb downstream 5.0kb downstream 5000 false Scaffold1595: 90396-95395 Capsella grandiflora
Cagra.1595s0024 10.0kb upstream 10.0kb upstream 12990 true Scaffold1595: 95396-108385 Capsella grandiflora
Cagra.1595s0024 10.0kb upstream 10.0kb upstream 10000 false Scaffold1595: 98386-108385 Capsella grandiflora
Cagra.1595s0024 10.0kb downstream 10.0kb downstream 12990 true Scaffold1595: 85396-98385 Capsella grandiflora
Cagra.1595s0024 10.0kb downstream 10.0kb downstream 10000 false Scaffold1595: 85396-95395 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381349 5261 Brassicaceae View MSA
123841678 5264 Brassicales-Malvales View MSA
124350842 5266 SBM View MSA
124254633 5268 Malvidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain