Gene : Cagra.1525s0001 C. grandiflora v1.1
Defline:  (1 of 3) PTHR31618:SF1 - MECHANOSENSITIVE ION CHANNEL PROTEIN 6-RELATED Genomic Order:  1
Name:  ? Cagra.1525s0001 Secondary Identifier:  ? PAC:28912420
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1525s0001 0.5kb upstream 0.5kb upstream 3606 true Scaffold1525: 3441-7046 Capsella grandiflora
Cagra.1525s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold1525: 3441-3940 Capsella grandiflora
Cagra.1525s0001 0.5kb downstream 0.5kb downstream 3606 true Scaffold1525: 3941-7546 Capsella grandiflora
Cagra.1525s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold1525: 7047-7546 Capsella grandiflora
Cagra.1525s0001 1.0kb upstream 1.0kb upstream 4106 true Scaffold1525: 2941-7046 Capsella grandiflora
Cagra.1525s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold1525: 2941-3940 Capsella grandiflora
Cagra.1525s0001 1.0kb downstream 1.0kb downstream 4106 true Scaffold1525: 3941-8046 Capsella grandiflora
Cagra.1525s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold1525: 7047-8046 Capsella grandiflora
Cagra.1525s0001 2.0kb upstream 2.0kb upstream 5106 true Scaffold1525: 1941-7046 Capsella grandiflora
Cagra.1525s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold1525: 1941-3940 Capsella grandiflora
Cagra.1525s0001 2.0kb downstream 2.0kb downstream 5106 true Scaffold1525: 3941-9046 Capsella grandiflora
Cagra.1525s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold1525: 7047-9046 Capsella grandiflora
Cagra.1525s0001 5.0kb upstream 5.0kb upstream 7046 true Scaffold1525: 1-7046 Capsella grandiflora
Cagra.1525s0001 5.0kb upstream 5.0kb upstream 3940 false Scaffold1525: 1-3940 Capsella grandiflora
Cagra.1525s0001 5.0kb downstream 5.0kb downstream 8106 true Scaffold1525: 3941-12046 Capsella grandiflora
Cagra.1525s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold1525: 7047-12046 Capsella grandiflora
Cagra.1525s0001 10.0kb upstream 10.0kb upstream 7046 true Scaffold1525: 1-7046 Capsella grandiflora
Cagra.1525s0001 10.0kb upstream 10.0kb upstream 3940 false Scaffold1525: 1-3940 Capsella grandiflora
Cagra.1525s0001 10.0kb downstream 10.0kb downstream 11309 true Scaffold1525: 3941-15249 Capsella grandiflora
Cagra.1525s0001 10.0kb downstream 10.0kb downstream 8203 false Scaffold1525: 7047-15249 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361465 5261 Brassicaceae View MSA
123798180 5264 Brassicales-Malvales View MSA
124350022 5266 SBM View MSA
124245082 5268 Malvidae View MSA
124068168 5270 Rosid View MSA
123745809 5271 Pentapetalae View MSA
122795005 5272 Eudicot View MSA
122045304 5273 Angiosperm View MSA
121348130 5274 Embryophyte View MSA
123428857 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain