Gene : Cagra.1535s0003 C. grandiflora v1.1
Defline:  (1 of 2) 6.3.3.2 - 5-formyltetrahydrofolate cyclo-ligase / Methenyl-THF synthetase Genomic Order:  3
Name:  ? Cagra.1535s0003 Secondary Identifier:  ? PAC:28896717
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3841 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1535s0003 0.5kb upstream 0.5kb upstream 2657 true Scaffold1535: 11942-14598 Capsella grandiflora
Cagra.1535s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold1535: 11942-12441 Capsella grandiflora
Cagra.1535s0003 0.5kb downstream 0.5kb downstream 2657 true Scaffold1535: 12442-15098 Capsella grandiflora
Cagra.1535s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold1535: 14599-15098 Capsella grandiflora
Cagra.1535s0003 1.0kb upstream 1.0kb upstream 3157 true Scaffold1535: 11442-14598 Capsella grandiflora
Cagra.1535s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold1535: 11442-12441 Capsella grandiflora
Cagra.1535s0003 1.0kb downstream 1.0kb downstream 3157 true Scaffold1535: 12442-15598 Capsella grandiflora
Cagra.1535s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold1535: 14599-15598 Capsella grandiflora
Cagra.1535s0003 2.0kb upstream 2.0kb upstream 4157 true Scaffold1535: 10442-14598 Capsella grandiflora
Cagra.1535s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold1535: 10442-12441 Capsella grandiflora
Cagra.1535s0003 2.0kb downstream 2.0kb downstream 4157 true Scaffold1535: 12442-16598 Capsella grandiflora
Cagra.1535s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold1535: 14599-16598 Capsella grandiflora
Cagra.1535s0003 5.0kb upstream 5.0kb upstream 7157 true Scaffold1535: 7442-14598 Capsella grandiflora
Cagra.1535s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold1535: 7442-12441 Capsella grandiflora
Cagra.1535s0003 5.0kb downstream 5.0kb downstream 7157 true Scaffold1535: 12442-19598 Capsella grandiflora
Cagra.1535s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold1535: 14599-19598 Capsella grandiflora
Cagra.1535s0003 10.0kb upstream 10.0kb upstream 12157 true Scaffold1535: 2442-14598 Capsella grandiflora
Cagra.1535s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold1535: 2442-12441 Capsella grandiflora
Cagra.1535s0003 10.0kb downstream 10.0kb downstream 12157 true Scaffold1535: 12442-24598 Capsella grandiflora
Cagra.1535s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold1535: 14599-24598 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041034 5273 Angiosperm View MSA
122379740 5261 Brassicaceae View MSA
123835860 5264 Brassicales-Malvales View MSA
124349517 5266 SBM View MSA
124246872 5268 Malvidae View MSA
124060507 5270 Rosid View MSA
123750943 5271 Pentapetalae View MSA
122792422 5272 Eudicot View MSA
121347096 5274 Embryophyte View MSA
123424141 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain