Gene : Cagra.1535s0007 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12741:SF21 - CALLOSE SYNTHASE 3 Genomic Order:  7
Name:  ? Cagra.1535s0007 Secondary Identifier:  ? PAC:28896719
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6773 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1535s0007 0.5kb upstream 0.5kb upstream 12069 true Scaffold1535: 29642-41710 Capsella grandiflora
Cagra.1535s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold1535: 29642-30141 Capsella grandiflora
Cagra.1535s0007 0.5kb downstream 0.5kb downstream 12069 true Scaffold1535: 30142-42210 Capsella grandiflora
Cagra.1535s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold1535: 41711-42210 Capsella grandiflora
Cagra.1535s0007 1.0kb upstream 1.0kb upstream 12569 true Scaffold1535: 29142-41710 Capsella grandiflora
Cagra.1535s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold1535: 29142-30141 Capsella grandiflora
Cagra.1535s0007 1.0kb downstream 1.0kb downstream 12569 true Scaffold1535: 30142-42710 Capsella grandiflora
Cagra.1535s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold1535: 41711-42710 Capsella grandiflora
Cagra.1535s0007 2.0kb upstream 2.0kb upstream 13569 true Scaffold1535: 28142-41710 Capsella grandiflora
Cagra.1535s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold1535: 28142-30141 Capsella grandiflora
Cagra.1535s0007 2.0kb downstream 2.0kb downstream 13569 true Scaffold1535: 30142-43710 Capsella grandiflora
Cagra.1535s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold1535: 41711-43710 Capsella grandiflora
Cagra.1535s0007 5.0kb upstream 5.0kb upstream 16569 true Scaffold1535: 25142-41710 Capsella grandiflora
Cagra.1535s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold1535: 25142-30141 Capsella grandiflora
Cagra.1535s0007 5.0kb downstream 5.0kb downstream 16569 true Scaffold1535: 30142-46710 Capsella grandiflora
Cagra.1535s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold1535: 41711-46710 Capsella grandiflora
Cagra.1535s0007 10.0kb upstream 10.0kb upstream 21569 true Scaffold1535: 20142-41710 Capsella grandiflora
Cagra.1535s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold1535: 20142-30141 Capsella grandiflora
Cagra.1535s0007 10.0kb downstream 10.0kb downstream 21569 true Scaffold1535: 30142-51710 Capsella grandiflora
Cagra.1535s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold1535: 41711-51710 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375589 5261 Brassicaceae View MSA
123839763 5264 Brassicales-Malvales View MSA
124346959 5266 SBM View MSA
124251802 5268 Malvidae View MSA
124072639 5270 Rosid View MSA
123745171 5271 Pentapetalae View MSA
122788947 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain