Gene : Cagra.1561s0012 C. grandiflora v1.1
Defline:  (1 of 2) PTHR24326:SF136 - HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54-RELATED Genomic Order:  12
Name:  ? Cagra.1561s0012 Secondary Identifier:  ? PAC:28907454
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1561s0012 0.5kb upstream 0.5kb upstream 2504 true Scaffold1561: 52427-54930 Capsella grandiflora
Cagra.1561s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold1561: 54431-54930 Capsella grandiflora
Cagra.1561s0012 0.5kb downstream 0.5kb downstream 2504 true Scaffold1561: 51927-54430 Capsella grandiflora
Cagra.1561s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold1561: 51927-52426 Capsella grandiflora
Cagra.1561s0012 1.0kb upstream 1.0kb upstream 3004 true Scaffold1561: 52427-55430 Capsella grandiflora
Cagra.1561s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold1561: 54431-55430 Capsella grandiflora
Cagra.1561s0012 1.0kb downstream 1.0kb downstream 3004 true Scaffold1561: 51427-54430 Capsella grandiflora
Cagra.1561s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold1561: 51427-52426 Capsella grandiflora
Cagra.1561s0012 2.0kb upstream 2.0kb upstream 4004 true Scaffold1561: 52427-56430 Capsella grandiflora
Cagra.1561s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold1561: 54431-56430 Capsella grandiflora
Cagra.1561s0012 2.0kb downstream 2.0kb downstream 4004 true Scaffold1561: 50427-54430 Capsella grandiflora
Cagra.1561s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold1561: 50427-52426 Capsella grandiflora
Cagra.1561s0012 5.0kb upstream 5.0kb upstream 7004 true Scaffold1561: 52427-59430 Capsella grandiflora
Cagra.1561s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold1561: 54431-59430 Capsella grandiflora
Cagra.1561s0012 5.0kb downstream 5.0kb downstream 7004 true Scaffold1561: 47427-54430 Capsella grandiflora
Cagra.1561s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold1561: 47427-52426 Capsella grandiflora
Cagra.1561s0012 10.0kb upstream 10.0kb upstream 12004 true Scaffold1561: 52427-64430 Capsella grandiflora
Cagra.1561s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold1561: 54431-64430 Capsella grandiflora
Cagra.1561s0012 10.0kb downstream 10.0kb downstream 12004 true Scaffold1561: 42427-54430 Capsella grandiflora
Cagra.1561s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold1561: 42427-52426 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379134 5261 Brassicaceae View MSA
123841004 5264 Brassicales-Malvales View MSA
124347057 5266 SBM View MSA
124248110 5268 Malvidae View MSA
124070886 5270 Rosid View MSA
123751160 5271 Pentapetalae View MSA
122797641 5272 Eudicot View MSA
122048587 5273 Angiosperm View MSA
121351579 5274 Embryophyte View MSA
123382235 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain