Gene : Cagra.1508s0142 C. grandiflora v1.1
Defline:  (1 of 43) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  142
Name:  ? Cagra.1508s0142 Secondary Identifier:  ? PAC:28905757
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1508s0142 0.5kb upstream 0.5kb upstream 4574 true Scaffold1508: 593929-598502 Capsella grandiflora
Cagra.1508s0142 0.5kb upstream 0.5kb upstream 500 false Scaffold1508: 598003-598502 Capsella grandiflora
Cagra.1508s0142 0.5kb downstream 0.5kb downstream 4574 true Scaffold1508: 593429-598002 Capsella grandiflora
Cagra.1508s0142 0.5kb downstream 0.5kb downstream 500 false Scaffold1508: 593429-593928 Capsella grandiflora
Cagra.1508s0142 1.0kb upstream 1.0kb upstream 5074 true Scaffold1508: 593929-599002 Capsella grandiflora
Cagra.1508s0142 1.0kb upstream 1.0kb upstream 1000 false Scaffold1508: 598003-599002 Capsella grandiflora
Cagra.1508s0142 1.0kb downstream 1.0kb downstream 5074 true Scaffold1508: 592929-598002 Capsella grandiflora
Cagra.1508s0142 1.0kb downstream 1.0kb downstream 1000 false Scaffold1508: 592929-593928 Capsella grandiflora
Cagra.1508s0142 2.0kb upstream 2.0kb upstream 6074 true Scaffold1508: 593929-600002 Capsella grandiflora
Cagra.1508s0142 2.0kb upstream 2.0kb upstream 2000 false Scaffold1508: 598003-600002 Capsella grandiflora
Cagra.1508s0142 2.0kb downstream 2.0kb downstream 6074 true Scaffold1508: 591929-598002 Capsella grandiflora
Cagra.1508s0142 2.0kb downstream 2.0kb downstream 2000 false Scaffold1508: 591929-593928 Capsella grandiflora
Cagra.1508s0142 5.0kb upstream 5.0kb upstream 9074 true Scaffold1508: 593929-603002 Capsella grandiflora
Cagra.1508s0142 5.0kb upstream 5.0kb upstream 5000 false Scaffold1508: 598003-603002 Capsella grandiflora
Cagra.1508s0142 5.0kb downstream 5.0kb downstream 9074 true Scaffold1508: 588929-598002 Capsella grandiflora
Cagra.1508s0142 5.0kb downstream 5.0kb downstream 5000 false Scaffold1508: 588929-593928 Capsella grandiflora
Cagra.1508s0142 10.0kb upstream 10.0kb upstream 14074 true Scaffold1508: 593929-608002 Capsella grandiflora
Cagra.1508s0142 10.0kb upstream 10.0kb upstream 10000 false Scaffold1508: 598003-608002 Capsella grandiflora
Cagra.1508s0142 10.0kb downstream 10.0kb downstream 14074 true Scaffold1508: 583929-598002 Capsella grandiflora
Cagra.1508s0142 10.0kb downstream 10.0kb downstream 10000 false Scaffold1508: 583929-593928 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370738 5261 Brassicaceae View MSA
123831414 5264 Brassicales-Malvales View MSA
124336632 5266 SBM View MSA
124240577 5268 Malvidae View MSA
124060675 5270 Rosid View MSA
123748612 5271 Pentapetalae View MSA
122791093 5272 Eudicot View MSA
122046985 5273 Angiosperm View MSA
121347235 5274 Embryophyte View MSA
123380515 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain