Gene : Cagra.1508s0154 C. grandiflora v1.1
Defline:  (1 of 2) PTHR19384:SF54 - FERREDOXIN--NADP REDUCTASE, ROOT ISOZYME 1, CHLOROPLASTIC-RELATED Genomic Order:  154
Name:  ? Cagra.1508s0154 Secondary Identifier:  ? PAC:28905800
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-101 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1508s0154 0.5kb upstream 0.5kb upstream 2586 true Scaffold1508: 639414-641999 Capsella grandiflora
Cagra.1508s0154 0.5kb upstream 0.5kb upstream 500 false Scaffold1508: 639414-639913 Capsella grandiflora
Cagra.1508s0154 0.5kb downstream 0.5kb downstream 2586 true Scaffold1508: 639914-642499 Capsella grandiflora
Cagra.1508s0154 0.5kb downstream 0.5kb downstream 500 false Scaffold1508: 642000-642499 Capsella grandiflora
Cagra.1508s0154 1.0kb upstream 1.0kb upstream 3086 true Scaffold1508: 638914-641999 Capsella grandiflora
Cagra.1508s0154 1.0kb upstream 1.0kb upstream 1000 false Scaffold1508: 638914-639913 Capsella grandiflora
Cagra.1508s0154 1.0kb downstream 1.0kb downstream 3086 true Scaffold1508: 639914-642999 Capsella grandiflora
Cagra.1508s0154 1.0kb downstream 1.0kb downstream 1000 false Scaffold1508: 642000-642999 Capsella grandiflora
Cagra.1508s0154 2.0kb upstream 2.0kb upstream 4086 true Scaffold1508: 637914-641999 Capsella grandiflora
Cagra.1508s0154 2.0kb upstream 2.0kb upstream 2000 false Scaffold1508: 637914-639913 Capsella grandiflora
Cagra.1508s0154 2.0kb downstream 2.0kb downstream 4086 true Scaffold1508: 639914-643999 Capsella grandiflora
Cagra.1508s0154 2.0kb downstream 2.0kb downstream 2000 false Scaffold1508: 642000-643999 Capsella grandiflora
Cagra.1508s0154 5.0kb upstream 5.0kb upstream 7086 true Scaffold1508: 634914-641999 Capsella grandiflora
Cagra.1508s0154 5.0kb upstream 5.0kb upstream 5000 false Scaffold1508: 634914-639913 Capsella grandiflora
Cagra.1508s0154 5.0kb downstream 5.0kb downstream 7086 true Scaffold1508: 639914-646999 Capsella grandiflora
Cagra.1508s0154 5.0kb downstream 5.0kb downstream 5000 false Scaffold1508: 642000-646999 Capsella grandiflora
Cagra.1508s0154 10.0kb upstream 10.0kb upstream 12086 true Scaffold1508: 629914-641999 Capsella grandiflora
Cagra.1508s0154 10.0kb upstream 10.0kb upstream 10000 false Scaffold1508: 629914-639913 Capsella grandiflora
Cagra.1508s0154 10.0kb downstream 10.0kb downstream 12086 true Scaffold1508: 639914-651999 Capsella grandiflora
Cagra.1508s0154 10.0kb downstream 10.0kb downstream 10000 false Scaffold1508: 642000-651999 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124337411 5266 SBM View MSA
122363969 5261 Brassicaceae View MSA
123837439 5264 Brassicales-Malvales View MSA
124248953 5268 Malvidae View MSA
124064755 5270 Rosid View MSA
123736625 5271 Pentapetalae View MSA
122790491 5272 Eudicot View MSA
122045006 5273 Angiosperm View MSA
121347443 5274 Embryophyte View MSA
123424825 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain