Gene : Cagra.1517s0003 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10314:SF110 - CYSTEINE SYNTHASE Genomic Order:  3
Name:  ? Cagra.1517s0003 Secondary Identifier:  ? PAC:28899355
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CYSTSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-6936 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1517s0003 0.5kb upstream 0.5kb upstream 3524 true Scaffold1517: 2219-5742 Capsella grandiflora
Cagra.1517s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold1517: 5243-5742 Capsella grandiflora
Cagra.1517s0003 0.5kb downstream 0.5kb downstream 3524 true Scaffold1517: 1719-5242 Capsella grandiflora
Cagra.1517s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold1517: 1719-2218 Capsella grandiflora
Cagra.1517s0003 1.0kb upstream 1.0kb upstream 4024 true Scaffold1517: 2219-6242 Capsella grandiflora
Cagra.1517s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold1517: 5243-6242 Capsella grandiflora
Cagra.1517s0003 1.0kb downstream 1.0kb downstream 4024 true Scaffold1517: 1219-5242 Capsella grandiflora
Cagra.1517s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold1517: 1219-2218 Capsella grandiflora
Cagra.1517s0003 2.0kb upstream 2.0kb upstream 5024 true Scaffold1517: 2219-7242 Capsella grandiflora
Cagra.1517s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold1517: 5243-7242 Capsella grandiflora
Cagra.1517s0003 2.0kb downstream 2.0kb downstream 5024 true Scaffold1517: 219-5242 Capsella grandiflora
Cagra.1517s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold1517: 219-2218 Capsella grandiflora
Cagra.1517s0003 5.0kb upstream 5.0kb upstream 8024 true Scaffold1517: 2219-10242 Capsella grandiflora
Cagra.1517s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold1517: 5243-10242 Capsella grandiflora
Cagra.1517s0003 5.0kb downstream 5.0kb downstream 5242 true Scaffold1517: 1-5242 Capsella grandiflora
Cagra.1517s0003 5.0kb downstream 5.0kb downstream 2218 false Scaffold1517: 1-2218 Capsella grandiflora
Cagra.1517s0003 10.0kb upstream 10.0kb upstream 13024 true Scaffold1517: 2219-15242 Capsella grandiflora
Cagra.1517s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold1517: 5243-15242 Capsella grandiflora
Cagra.1517s0003 10.0kb downstream 10.0kb downstream 5242 true Scaffold1517: 1-5242 Capsella grandiflora
Cagra.1517s0003 10.0kb downstream 10.0kb downstream 2218 false Scaffold1517: 1-2218 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377220 5261 Brassicaceae View MSA
123838792 5264 Brassicales-Malvales View MSA
124340029 5266 SBM View MSA
124241185 5268 Malvidae View MSA
124068226 5270 Rosid View MSA
123737517 5271 Pentapetalae View MSA
122787269 5272 Eudicot View MSA
122042312 5273 Angiosperm View MSA
121350970 5274 Embryophyte View MSA
123424805 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain