Gene : Cagra.1517s0016 C. grandiflora v1.1
Defline:  (1 of 3) PTHR31375:SF2 - POLYGALACTURONASE/PECTINASE Genomic Order:  16
Name:  ? Cagra.1517s0016 Secondary Identifier:  ? PAC:28899394
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1517s0016 0.5kb upstream 0.5kb upstream 2137 true Scaffold1517: 39843-41979 Capsella grandiflora
Cagra.1517s0016 0.5kb upstream 0.5kb upstream 500 false Scaffold1517: 41480-41979 Capsella grandiflora
Cagra.1517s0016 0.5kb downstream 0.5kb downstream 2137 true Scaffold1517: 39343-41479 Capsella grandiflora
Cagra.1517s0016 0.5kb downstream 0.5kb downstream 500 false Scaffold1517: 39343-39842 Capsella grandiflora
Cagra.1517s0016 1.0kb upstream 1.0kb upstream 2637 true Scaffold1517: 39843-42479 Capsella grandiflora
Cagra.1517s0016 1.0kb upstream 1.0kb upstream 1000 false Scaffold1517: 41480-42479 Capsella grandiflora
Cagra.1517s0016 1.0kb downstream 1.0kb downstream 2637 true Scaffold1517: 38843-41479 Capsella grandiflora
Cagra.1517s0016 1.0kb downstream 1.0kb downstream 1000 false Scaffold1517: 38843-39842 Capsella grandiflora
Cagra.1517s0016 2.0kb upstream 2.0kb upstream 3637 true Scaffold1517: 39843-43479 Capsella grandiflora
Cagra.1517s0016 2.0kb upstream 2.0kb upstream 2000 false Scaffold1517: 41480-43479 Capsella grandiflora
Cagra.1517s0016 2.0kb downstream 2.0kb downstream 3637 true Scaffold1517: 37843-41479 Capsella grandiflora
Cagra.1517s0016 2.0kb downstream 2.0kb downstream 2000 false Scaffold1517: 37843-39842 Capsella grandiflora
Cagra.1517s0016 5.0kb upstream 5.0kb upstream 6637 true Scaffold1517: 39843-46479 Capsella grandiflora
Cagra.1517s0016 5.0kb upstream 5.0kb upstream 5000 false Scaffold1517: 41480-46479 Capsella grandiflora
Cagra.1517s0016 5.0kb downstream 5.0kb downstream 6637 true Scaffold1517: 34843-41479 Capsella grandiflora
Cagra.1517s0016 5.0kb downstream 5.0kb downstream 5000 false Scaffold1517: 34843-39842 Capsella grandiflora
Cagra.1517s0016 10.0kb upstream 10.0kb upstream 11637 true Scaffold1517: 39843-51479 Capsella grandiflora
Cagra.1517s0016 10.0kb upstream 10.0kb upstream 10000 false Scaffold1517: 41480-51479 Capsella grandiflora
Cagra.1517s0016 10.0kb downstream 10.0kb downstream 11637 true Scaffold1517: 29843-41479 Capsella grandiflora
Cagra.1517s0016 10.0kb downstream 10.0kb downstream 10000 false Scaffold1517: 29843-39842 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366380 5261 Brassicaceae View MSA
123837359 5264 Brassicales-Malvales View MSA
124322295 5266 SBM View MSA
124252972 5268 Malvidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain