Gene : Cagra.1517s0017 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31375:SF18 - POLYGALACTURONASE-RELATED Genomic Order:  17
Name:  ? Cagra.1517s0017 Secondary Identifier:  ? PAC:28899350
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1517s0017 0.5kb upstream 0.5kb upstream 1957 true Scaffold1517: 45322-47278 Capsella grandiflora
Cagra.1517s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold1517: 45322-45821 Capsella grandiflora
Cagra.1517s0017 0.5kb downstream 0.5kb downstream 1957 true Scaffold1517: 45822-47778 Capsella grandiflora
Cagra.1517s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold1517: 47279-47778 Capsella grandiflora
Cagra.1517s0017 1.0kb upstream 1.0kb upstream 2457 true Scaffold1517: 44822-47278 Capsella grandiflora
Cagra.1517s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold1517: 44822-45821 Capsella grandiflora
Cagra.1517s0017 1.0kb downstream 1.0kb downstream 2457 true Scaffold1517: 45822-48278 Capsella grandiflora
Cagra.1517s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold1517: 47279-48278 Capsella grandiflora
Cagra.1517s0017 2.0kb upstream 2.0kb upstream 3457 true Scaffold1517: 43822-47278 Capsella grandiflora
Cagra.1517s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold1517: 43822-45821 Capsella grandiflora
Cagra.1517s0017 2.0kb downstream 2.0kb downstream 3457 true Scaffold1517: 45822-49278 Capsella grandiflora
Cagra.1517s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold1517: 47279-49278 Capsella grandiflora
Cagra.1517s0017 5.0kb upstream 5.0kb upstream 6457 true Scaffold1517: 40822-47278 Capsella grandiflora
Cagra.1517s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold1517: 40822-45821 Capsella grandiflora
Cagra.1517s0017 5.0kb downstream 5.0kb downstream 6457 true Scaffold1517: 45822-52278 Capsella grandiflora
Cagra.1517s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold1517: 47279-52278 Capsella grandiflora
Cagra.1517s0017 10.0kb upstream 10.0kb upstream 11457 true Scaffold1517: 35822-47278 Capsella grandiflora
Cagra.1517s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold1517: 35822-45821 Capsella grandiflora
Cagra.1517s0017 10.0kb downstream 10.0kb downstream 11457 true Scaffold1517: 45822-57278 Capsella grandiflora
Cagra.1517s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold1517: 47279-57278 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367803 5261 Brassicaceae View MSA
123799425 5264 Brassicales-Malvales View MSA
124296947 5266 SBM View MSA
124243771 5268 Malvidae View MSA
124074410 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain