Gene : Cagra.1517s0019 C. grandiflora v1.1
Defline:  (1 of 3) PTHR31375:SF31 - F3F20.10 PROTEIN-RELATED Genomic Order:  19
Name:  ? Cagra.1517s0019 Secondary Identifier:  ? PAC:28899349
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1517s0019 0.5kb upstream 0.5kb upstream 2198 true Scaffold1517: 53178-55375 Capsella grandiflora
Cagra.1517s0019 0.5kb upstream 0.5kb upstream 500 false Scaffold1517: 53178-53677 Capsella grandiflora
Cagra.1517s0019 0.5kb downstream 0.5kb downstream 2198 true Scaffold1517: 53678-55875 Capsella grandiflora
Cagra.1517s0019 0.5kb downstream 0.5kb downstream 500 false Scaffold1517: 55376-55875 Capsella grandiflora
Cagra.1517s0019 1.0kb upstream 1.0kb upstream 2698 true Scaffold1517: 52678-55375 Capsella grandiflora
Cagra.1517s0019 1.0kb upstream 1.0kb upstream 1000 false Scaffold1517: 52678-53677 Capsella grandiflora
Cagra.1517s0019 1.0kb downstream 1.0kb downstream 2698 true Scaffold1517: 53678-56375 Capsella grandiflora
Cagra.1517s0019 1.0kb downstream 1.0kb downstream 1000 false Scaffold1517: 55376-56375 Capsella grandiflora
Cagra.1517s0019 2.0kb upstream 2.0kb upstream 3698 true Scaffold1517: 51678-55375 Capsella grandiflora
Cagra.1517s0019 2.0kb upstream 2.0kb upstream 2000 false Scaffold1517: 51678-53677 Capsella grandiflora
Cagra.1517s0019 2.0kb downstream 2.0kb downstream 3698 true Scaffold1517: 53678-57375 Capsella grandiflora
Cagra.1517s0019 2.0kb downstream 2.0kb downstream 2000 false Scaffold1517: 55376-57375 Capsella grandiflora
Cagra.1517s0019 5.0kb upstream 5.0kb upstream 6698 true Scaffold1517: 48678-55375 Capsella grandiflora
Cagra.1517s0019 5.0kb upstream 5.0kb upstream 5000 false Scaffold1517: 48678-53677 Capsella grandiflora
Cagra.1517s0019 5.0kb downstream 5.0kb downstream 6698 true Scaffold1517: 53678-60375 Capsella grandiflora
Cagra.1517s0019 5.0kb downstream 5.0kb downstream 5000 false Scaffold1517: 55376-60375 Capsella grandiflora
Cagra.1517s0019 10.0kb upstream 10.0kb upstream 11698 true Scaffold1517: 43678-55375 Capsella grandiflora
Cagra.1517s0019 10.0kb upstream 10.0kb upstream 10000 false Scaffold1517: 43678-53677 Capsella grandiflora
Cagra.1517s0019 10.0kb downstream 10.0kb downstream 11698 true Scaffold1517: 53678-65375 Capsella grandiflora
Cagra.1517s0019 10.0kb downstream 10.0kb downstream 10000 false Scaffold1517: 55376-65375 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363034 5261 Brassicaceae View MSA
123839902 5264 Brassicales-Malvales View MSA
124322664 5266 SBM View MSA
124241850 5268 Malvidae View MSA
124074410 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain