Gene : Cagra.1730s0002 C. grandiflora v1.1
Defline:  (1 of 3) PTHR21493//PTHR21493:SF104 - CGI-141-RELATED/LIPASE CONTAINING PROTEIN Genomic Order:  2
Name:  ? Cagra.1730s0002 Secondary Identifier:  ? PAC:28910678
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora LIPAS-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1730s0002 0.5kb upstream 0.5kb upstream 6434 true Scaffold1730: 12540-18973 Capsella grandiflora
Cagra.1730s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold1730: 12540-13039 Capsella grandiflora
Cagra.1730s0002 0.5kb downstream 0.5kb downstream 6231 true Scaffold1730: 13040-19270 Capsella grandiflora
Cagra.1730s0002 0.5kb downstream 0.5kb downstream 297 false Scaffold1730: 18974-19270 Capsella grandiflora
Cagra.1730s0002 1.0kb upstream 1.0kb upstream 6934 true Scaffold1730: 12040-18973 Capsella grandiflora
Cagra.1730s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold1730: 12040-13039 Capsella grandiflora
Cagra.1730s0002 1.0kb downstream 1.0kb downstream 6231 true Scaffold1730: 13040-19270 Capsella grandiflora
Cagra.1730s0002 1.0kb downstream 1.0kb downstream 297 false Scaffold1730: 18974-19270 Capsella grandiflora
Cagra.1730s0002 2.0kb upstream 2.0kb upstream 7934 true Scaffold1730: 11040-18973 Capsella grandiflora
Cagra.1730s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold1730: 11040-13039 Capsella grandiflora
Cagra.1730s0002 2.0kb downstream 2.0kb downstream 6231 true Scaffold1730: 13040-19270 Capsella grandiflora
Cagra.1730s0002 2.0kb downstream 2.0kb downstream 297 false Scaffold1730: 18974-19270 Capsella grandiflora
Cagra.1730s0002 5.0kb upstream 5.0kb upstream 10934 true Scaffold1730: 8040-18973 Capsella grandiflora
Cagra.1730s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold1730: 8040-13039 Capsella grandiflora
Cagra.1730s0002 5.0kb downstream 5.0kb downstream 6231 true Scaffold1730: 13040-19270 Capsella grandiflora
Cagra.1730s0002 5.0kb downstream 5.0kb downstream 297 false Scaffold1730: 18974-19270 Capsella grandiflora
Cagra.1730s0002 10.0kb upstream 10.0kb upstream 15934 true Scaffold1730: 3040-18973 Capsella grandiflora
Cagra.1730s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold1730: 3040-13039 Capsella grandiflora
Cagra.1730s0002 10.0kb downstream 10.0kb downstream 6231 true Scaffold1730: 13040-19270 Capsella grandiflora
Cagra.1730s0002 10.0kb downstream 10.0kb downstream 297 false Scaffold1730: 18974-19270 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377637 5261 Brassicaceae View MSA
123801588 5264 Brassicales-Malvales View MSA
124298871 5266 SBM View MSA
124150415 5268 Malvidae View MSA
123876030 5270 Rosid View MSA
123746073 5271 Pentapetalae View MSA
122791572 5272 Eudicot View MSA
122051132 5273 Angiosperm View MSA
121349994 5274 Embryophyte View MSA
123428676 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain