Gene : Cagra.1725s0024 C. grandiflora v1.1
Defline:  (1 of 2) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase Genomic Order:  24
Name:  ? Cagra.1725s0024 Secondary Identifier:  ? PAC:28896081
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1269 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1725s0024 0.5kb upstream 0.5kb upstream 3711 true Scaffold1725: 91975-95685 Capsella grandiflora
Cagra.1725s0024 0.5kb upstream 0.5kb upstream 500 false Scaffold1725: 91975-92474 Capsella grandiflora
Cagra.1725s0024 0.5kb downstream 0.5kb downstream 3711 true Scaffold1725: 92475-96185 Capsella grandiflora
Cagra.1725s0024 0.5kb downstream 0.5kb downstream 500 false Scaffold1725: 95686-96185 Capsella grandiflora
Cagra.1725s0024 1.0kb upstream 1.0kb upstream 4211 true Scaffold1725: 91475-95685 Capsella grandiflora
Cagra.1725s0024 1.0kb upstream 1.0kb upstream 1000 false Scaffold1725: 91475-92474 Capsella grandiflora
Cagra.1725s0024 1.0kb downstream 1.0kb downstream 4211 true Scaffold1725: 92475-96685 Capsella grandiflora
Cagra.1725s0024 1.0kb downstream 1.0kb downstream 1000 false Scaffold1725: 95686-96685 Capsella grandiflora
Cagra.1725s0024 2.0kb upstream 2.0kb upstream 5211 true Scaffold1725: 90475-95685 Capsella grandiflora
Cagra.1725s0024 2.0kb upstream 2.0kb upstream 2000 false Scaffold1725: 90475-92474 Capsella grandiflora
Cagra.1725s0024 2.0kb downstream 2.0kb downstream 5211 true Scaffold1725: 92475-97685 Capsella grandiflora
Cagra.1725s0024 2.0kb downstream 2.0kb downstream 2000 false Scaffold1725: 95686-97685 Capsella grandiflora
Cagra.1725s0024 5.0kb upstream 5.0kb upstream 8211 true Scaffold1725: 87475-95685 Capsella grandiflora
Cagra.1725s0024 5.0kb upstream 5.0kb upstream 5000 false Scaffold1725: 87475-92474 Capsella grandiflora
Cagra.1725s0024 5.0kb downstream 5.0kb downstream 8211 true Scaffold1725: 92475-100685 Capsella grandiflora
Cagra.1725s0024 5.0kb downstream 5.0kb downstream 5000 false Scaffold1725: 95686-100685 Capsella grandiflora
Cagra.1725s0024 10.0kb upstream 10.0kb upstream 13211 true Scaffold1725: 82475-95685 Capsella grandiflora
Cagra.1725s0024 10.0kb upstream 10.0kb upstream 10000 false Scaffold1725: 82475-92474 Capsella grandiflora
Cagra.1725s0024 10.0kb downstream 10.0kb downstream 13211 true Scaffold1725: 92475-105685 Capsella grandiflora
Cagra.1725s0024 10.0kb downstream 10.0kb downstream 10000 false Scaffold1725: 95686-105685 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379396 5261 Brassicaceae View MSA
123829711 5264 Brassicales-Malvales View MSA
124345040 5266 SBM View MSA
124244021 5268 Malvidae View MSA
124065016 5270 Rosid View MSA
123738710 5271 Pentapetalae View MSA
122788202 5272 Eudicot View MSA
122050140 5273 Angiosperm View MSA
121346522 5274 Embryophyte View MSA
123424720 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain