Gene : Cagra.1725s0029 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11406:SF9 - PHOSPHOGLYCERATE KINASE Genomic Order:  29
Name:  ? Cagra.1725s0029 Secondary Identifier:  ? PAC:28896199
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ANAEROFRUCAT-PWY Capsella grandiflora pathologic  
Cgrandiflora ANAGLYCOLYSIS-PWY Capsella grandiflora pathologic  
Cgrandiflora CALVIN-PWY Capsella grandiflora pathologic  
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-1042 Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  
Cgrandiflora SUCSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1725s0029 0.5kb upstream 0.5kb upstream 3038 true Scaffold1725: 110393-113430 Capsella grandiflora
Cagra.1725s0029 0.5kb upstream 0.5kb upstream 500 false Scaffold1725: 112931-113430 Capsella grandiflora
Cagra.1725s0029 0.5kb downstream 0.5kb downstream 3038 true Scaffold1725: 109893-112930 Capsella grandiflora
Cagra.1725s0029 0.5kb downstream 0.5kb downstream 500 false Scaffold1725: 109893-110392 Capsella grandiflora
Cagra.1725s0029 1.0kb upstream 1.0kb upstream 3538 true Scaffold1725: 110393-113930 Capsella grandiflora
Cagra.1725s0029 1.0kb upstream 1.0kb upstream 1000 false Scaffold1725: 112931-113930 Capsella grandiflora
Cagra.1725s0029 1.0kb downstream 1.0kb downstream 3538 true Scaffold1725: 109393-112930 Capsella grandiflora
Cagra.1725s0029 1.0kb downstream 1.0kb downstream 1000 false Scaffold1725: 109393-110392 Capsella grandiflora
Cagra.1725s0029 2.0kb upstream 2.0kb upstream 4538 true Scaffold1725: 110393-114930 Capsella grandiflora
Cagra.1725s0029 2.0kb upstream 2.0kb upstream 2000 false Scaffold1725: 112931-114930 Capsella grandiflora
Cagra.1725s0029 2.0kb downstream 2.0kb downstream 4538 true Scaffold1725: 108393-112930 Capsella grandiflora
Cagra.1725s0029 2.0kb downstream 2.0kb downstream 2000 false Scaffold1725: 108393-110392 Capsella grandiflora
Cagra.1725s0029 5.0kb upstream 5.0kb upstream 7538 true Scaffold1725: 110393-117930 Capsella grandiflora
Cagra.1725s0029 5.0kb upstream 5.0kb upstream 5000 false Scaffold1725: 112931-117930 Capsella grandiflora
Cagra.1725s0029 5.0kb downstream 5.0kb downstream 7538 true Scaffold1725: 105393-112930 Capsella grandiflora
Cagra.1725s0029 5.0kb downstream 5.0kb downstream 5000 false Scaffold1725: 105393-110392 Capsella grandiflora
Cagra.1725s0029 10.0kb upstream 10.0kb upstream 12538 true Scaffold1725: 110393-122930 Capsella grandiflora
Cagra.1725s0029 10.0kb upstream 10.0kb upstream 10000 false Scaffold1725: 112931-122930 Capsella grandiflora
Cagra.1725s0029 10.0kb downstream 10.0kb downstream 12538 true Scaffold1725: 100393-112930 Capsella grandiflora
Cagra.1725s0029 10.0kb downstream 10.0kb downstream 10000 false Scaffold1725: 100393-110392 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040878 5273 Angiosperm View MSA
122370985 5261 Brassicaceae View MSA
123830629 5264 Brassicales-Malvales View MSA
124340195 5266 SBM View MSA
124253761 5268 Malvidae View MSA
124067355 5270 Rosid View MSA
123751254 5271 Pentapetalae View MSA
122790171 5272 Eudicot View MSA
121348563 5274 Embryophyte View MSA
123423936 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain