Gene : Cagra.1671s0409 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31356:SF10 - L-ASCORBATE PEROXIDASE 2, CYTOSOLIC Genomic Order:  409
Name:  ? Cagra.1671s0409 Secondary Identifier:  ? PAC:28914234
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-2261 Capsella grandiflora pathologic  
Cgrandiflora PWY-6959 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1671s0409 0.5kb upstream 0.5kb upstream 2770 true Scaffold1671: 1465795-1468564 Capsella grandiflora
Cagra.1671s0409 0.5kb upstream 0.5kb upstream 500 false Scaffold1671: 1465795-1466294 Capsella grandiflora
Cagra.1671s0409 0.5kb downstream 0.5kb downstream 2770 true Scaffold1671: 1466295-1469064 Capsella grandiflora
Cagra.1671s0409 0.5kb downstream 0.5kb downstream 500 false Scaffold1671: 1468565-1469064 Capsella grandiflora
Cagra.1671s0409 1.0kb upstream 1.0kb upstream 3270 true Scaffold1671: 1465295-1468564 Capsella grandiflora
Cagra.1671s0409 1.0kb upstream 1.0kb upstream 1000 false Scaffold1671: 1465295-1466294 Capsella grandiflora
Cagra.1671s0409 1.0kb downstream 1.0kb downstream 3270 true Scaffold1671: 1466295-1469564 Capsella grandiflora
Cagra.1671s0409 1.0kb downstream 1.0kb downstream 1000 false Scaffold1671: 1468565-1469564 Capsella grandiflora
Cagra.1671s0409 2.0kb upstream 2.0kb upstream 4270 true Scaffold1671: 1464295-1468564 Capsella grandiflora
Cagra.1671s0409 2.0kb upstream 2.0kb upstream 2000 false Scaffold1671: 1464295-1466294 Capsella grandiflora
Cagra.1671s0409 2.0kb downstream 2.0kb downstream 4270 true Scaffold1671: 1466295-1470564 Capsella grandiflora
Cagra.1671s0409 2.0kb downstream 2.0kb downstream 2000 false Scaffold1671: 1468565-1470564 Capsella grandiflora
Cagra.1671s0409 5.0kb upstream 5.0kb upstream 7270 true Scaffold1671: 1461295-1468564 Capsella grandiflora
Cagra.1671s0409 5.0kb upstream 5.0kb upstream 5000 false Scaffold1671: 1461295-1466294 Capsella grandiflora
Cagra.1671s0409 5.0kb downstream 5.0kb downstream 7270 true Scaffold1671: 1466295-1473564 Capsella grandiflora
Cagra.1671s0409 5.0kb downstream 5.0kb downstream 5000 false Scaffold1671: 1468565-1473564 Capsella grandiflora
Cagra.1671s0409 10.0kb upstream 10.0kb upstream 12270 true Scaffold1671: 1456295-1468564 Capsella grandiflora
Cagra.1671s0409 10.0kb upstream 10.0kb upstream 10000 false Scaffold1671: 1456295-1466294 Capsella grandiflora
Cagra.1671s0409 10.0kb downstream 10.0kb downstream 12270 true Scaffold1671: 1466295-1478564 Capsella grandiflora
Cagra.1671s0409 10.0kb downstream 10.0kb downstream 10000 false Scaffold1671: 1468565-1478564 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365618 5261 Brassicaceae View MSA
123839523 5264 Brassicales-Malvales View MSA
124339715 5266 SBM View MSA
124248895 5268 Malvidae View MSA
124068994 5270 Rosid View MSA
123741454 5271 Pentapetalae View MSA
122796920 5272 Eudicot View MSA
122044564 5273 Angiosperm View MSA
121344996 5274 Embryophyte View MSA
123426233 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain