Gene : Cagra.1670s0008 C. grandiflora v1.1
Defline:  (1 of 3) PTHR11751:SF411 - AMINOTRANSFERASE ACS10-RELATED Genomic Order:  8
Name:  ? Cagra.1670s0008 Secondary Identifier:  ? PAC:28894678
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ASPARTATE-DEG1-PWY Capsella grandiflora pathologic  
Cgrandiflora ASPARTATESYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3001 Capsella grandiflora pathologic  
Cgrandiflora PWY-7115 Capsella grandiflora pathologic  
Cgrandiflora PWY-7117 Capsella grandiflora pathologic  
Cgrandiflora THRESYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1670s0008 0.5kb upstream 0.5kb upstream 2557 true Scaffold1670: 28552-31108 Capsella grandiflora
Cagra.1670s0008 0.5kb upstream 0.5kb upstream 500 false Scaffold1670: 28552-29051 Capsella grandiflora
Cagra.1670s0008 0.5kb downstream 0.5kb downstream 2557 true Scaffold1670: 29052-31608 Capsella grandiflora
Cagra.1670s0008 0.5kb downstream 0.5kb downstream 500 false Scaffold1670: 31109-31608 Capsella grandiflora
Cagra.1670s0008 1.0kb upstream 1.0kb upstream 3057 true Scaffold1670: 28052-31108 Capsella grandiflora
Cagra.1670s0008 1.0kb upstream 1.0kb upstream 1000 false Scaffold1670: 28052-29051 Capsella grandiflora
Cagra.1670s0008 1.0kb downstream 1.0kb downstream 3057 true Scaffold1670: 29052-32108 Capsella grandiflora
Cagra.1670s0008 1.0kb downstream 1.0kb downstream 1000 false Scaffold1670: 31109-32108 Capsella grandiflora
Cagra.1670s0008 2.0kb upstream 2.0kb upstream 4057 true Scaffold1670: 27052-31108 Capsella grandiflora
Cagra.1670s0008 2.0kb upstream 2.0kb upstream 2000 false Scaffold1670: 27052-29051 Capsella grandiflora
Cagra.1670s0008 2.0kb downstream 2.0kb downstream 4057 true Scaffold1670: 29052-33108 Capsella grandiflora
Cagra.1670s0008 2.0kb downstream 2.0kb downstream 2000 false Scaffold1670: 31109-33108 Capsella grandiflora
Cagra.1670s0008 5.0kb upstream 5.0kb upstream 7057 true Scaffold1670: 24052-31108 Capsella grandiflora
Cagra.1670s0008 5.0kb upstream 5.0kb upstream 5000 false Scaffold1670: 24052-29051 Capsella grandiflora
Cagra.1670s0008 5.0kb downstream 5.0kb downstream 7057 true Scaffold1670: 29052-36108 Capsella grandiflora
Cagra.1670s0008 5.0kb downstream 5.0kb downstream 5000 false Scaffold1670: 31109-36108 Capsella grandiflora
Cagra.1670s0008 10.0kb upstream 10.0kb upstream 12057 true Scaffold1670: 19052-31108 Capsella grandiflora
Cagra.1670s0008 10.0kb upstream 10.0kb upstream 10000 false Scaffold1670: 19052-29051 Capsella grandiflora
Cagra.1670s0008 10.0kb downstream 10.0kb downstream 12057 true Scaffold1670: 29052-41108 Capsella grandiflora
Cagra.1670s0008 10.0kb downstream 10.0kb downstream 10000 false Scaffold1670: 31109-41108 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368439 5261 Brassicaceae View MSA
123837243 5264 Brassicales-Malvales View MSA
124346095 5266 SBM View MSA
124240842 5268 Malvidae View MSA
124060973 5270 Rosid View MSA
123749397 5271 Pentapetalae View MSA
122792167 5272 Eudicot View MSA
122042730 5273 Angiosperm View MSA
121351183 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain