Gene : Cagra.1912s0001 C. grandiflora v1.1
Defline:  (1 of 1) 4.3.1.17 - L-serine ammonia-lyase / Serine deaminase Genomic Order:  1
Name:  ? Cagra.1912s0001 Secondary Identifier:  ? PAC:28897816
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY0-1535 Capsella grandiflora pathologic  
Cgrandiflora PWY-6196 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1912s0001 0.5kb upstream 0.5kb upstream 2352 true Scaffold1912: 1-2352 Capsella grandiflora
Cagra.1912s0001 0.5kb upstream 0.5kb upstream 240 false Scaffold1912: 1-240 Capsella grandiflora
Cagra.1912s0001 0.5kb downstream 0.5kb downstream 2612 true Scaffold1912: 241-2852 Capsella grandiflora
Cagra.1912s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold1912: 2353-2852 Capsella grandiflora
Cagra.1912s0001 1.0kb upstream 1.0kb upstream 2352 true Scaffold1912: 1-2352 Capsella grandiflora
Cagra.1912s0001 1.0kb upstream 1.0kb upstream 240 false Scaffold1912: 1-240 Capsella grandiflora
Cagra.1912s0001 1.0kb downstream 1.0kb downstream 3112 true Scaffold1912: 241-3352 Capsella grandiflora
Cagra.1912s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold1912: 2353-3352 Capsella grandiflora
Cagra.1912s0001 2.0kb upstream 2.0kb upstream 2352 true Scaffold1912: 1-2352 Capsella grandiflora
Cagra.1912s0001 2.0kb upstream 2.0kb upstream 240 false Scaffold1912: 1-240 Capsella grandiflora
Cagra.1912s0001 2.0kb downstream 2.0kb downstream 4112 true Scaffold1912: 241-4352 Capsella grandiflora
Cagra.1912s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold1912: 2353-4352 Capsella grandiflora
Cagra.1912s0001 5.0kb upstream 5.0kb upstream 2352 true Scaffold1912: 1-2352 Capsella grandiflora
Cagra.1912s0001 5.0kb upstream 5.0kb upstream 240 false Scaffold1912: 1-240 Capsella grandiflora
Cagra.1912s0001 5.0kb downstream 5.0kb downstream 7112 true Scaffold1912: 241-7352 Capsella grandiflora
Cagra.1912s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold1912: 2353-7352 Capsella grandiflora
Cagra.1912s0001 10.0kb upstream 10.0kb upstream 2352 true Scaffold1912: 1-2352 Capsella grandiflora
Cagra.1912s0001 10.0kb upstream 10.0kb upstream 240 false Scaffold1912: 1-240 Capsella grandiflora
Cagra.1912s0001 10.0kb downstream 10.0kb downstream 12112 true Scaffold1912: 241-12352 Capsella grandiflora
Cagra.1912s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold1912: 2353-12352 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367741 5261 Brassicaceae View MSA
123832411 5264 Brassicales-Malvales View MSA
124346435 5266 SBM View MSA
124238391 5268 Malvidae View MSA
124063016 5270 Rosid View MSA
123740366 5271 Pentapetalae View MSA
122789012 5272 Eudicot View MSA
122046421 5273 Angiosperm View MSA
121344246 5274 Embryophyte View MSA
123427671 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain