Gene : Cagra.1876s0005 C. grandiflora v1.1
Defline:  (1 of 2) PTHR12634:SF8 - PROTEIN SAPS-1, ISOFORM C Genomic Order:  5
Name:  ? Cagra.1876s0005 Secondary Identifier:  ? PAC:28903302
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1876s0005 0.5kb upstream 0.5kb upstream 5966 true Scaffold1876: 23328-29293 Capsella grandiflora
Cagra.1876s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold1876: 23328-23827 Capsella grandiflora
Cagra.1876s0005 0.5kb downstream 0.5kb downstream 5966 true Scaffold1876: 23828-29793 Capsella grandiflora
Cagra.1876s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold1876: 29294-29793 Capsella grandiflora
Cagra.1876s0005 1.0kb upstream 1.0kb upstream 6466 true Scaffold1876: 22828-29293 Capsella grandiflora
Cagra.1876s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold1876: 22828-23827 Capsella grandiflora
Cagra.1876s0005 1.0kb downstream 1.0kb downstream 6466 true Scaffold1876: 23828-30293 Capsella grandiflora
Cagra.1876s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold1876: 29294-30293 Capsella grandiflora
Cagra.1876s0005 2.0kb upstream 2.0kb upstream 7466 true Scaffold1876: 21828-29293 Capsella grandiflora
Cagra.1876s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold1876: 21828-23827 Capsella grandiflora
Cagra.1876s0005 2.0kb downstream 2.0kb downstream 7466 true Scaffold1876: 23828-31293 Capsella grandiflora
Cagra.1876s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold1876: 29294-31293 Capsella grandiflora
Cagra.1876s0005 5.0kb upstream 5.0kb upstream 10466 true Scaffold1876: 18828-29293 Capsella grandiflora
Cagra.1876s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold1876: 18828-23827 Capsella grandiflora
Cagra.1876s0005 5.0kb downstream 5.0kb downstream 10466 true Scaffold1876: 23828-34293 Capsella grandiflora
Cagra.1876s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold1876: 29294-34293 Capsella grandiflora
Cagra.1876s0005 10.0kb upstream 10.0kb upstream 15466 true Scaffold1876: 13828-29293 Capsella grandiflora
Cagra.1876s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold1876: 13828-23827 Capsella grandiflora
Cagra.1876s0005 10.0kb downstream 10.0kb downstream 15466 true Scaffold1876: 23828-39293 Capsella grandiflora
Cagra.1876s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold1876: 29294-39293 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368962 5261 Brassicaceae View MSA
123838110 5264 Brassicales-Malvales View MSA
124322399 5266 SBM View MSA
124169134 5268 Malvidae View MSA
124069403 5270 Rosid View MSA
123742234 5271 Pentapetalae View MSA
122794805 5272 Eudicot View MSA
122051052 5273 Angiosperm View MSA
121347725 5274 Embryophyte View MSA
123428189 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain