Gene : Cagra.1777s0040 C. grandiflora v1.1
Defline:  (1 of 4) 2.5.1.16 - Spermidine synthase / Putrescine aminopropyltransferase Genomic Order:  40
Name:  ? Cagra.1777s0040 Secondary Identifier:  ? PAC:28910349
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora BSUBPOLYAMSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-7528 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1777s0040 0.5kb upstream 0.5kb upstream 2862 true Scaffold1777: 180552-183413 Capsella grandiflora
Cagra.1777s0040 0.5kb upstream 0.5kb upstream 500 false Scaffold1777: 180552-181051 Capsella grandiflora
Cagra.1777s0040 0.5kb downstream 0.5kb downstream 2862 true Scaffold1777: 181052-183913 Capsella grandiflora
Cagra.1777s0040 0.5kb downstream 0.5kb downstream 500 false Scaffold1777: 183414-183913 Capsella grandiflora
Cagra.1777s0040 1.0kb upstream 1.0kb upstream 3362 true Scaffold1777: 180052-183413 Capsella grandiflora
Cagra.1777s0040 1.0kb upstream 1.0kb upstream 1000 false Scaffold1777: 180052-181051 Capsella grandiflora
Cagra.1777s0040 1.0kb downstream 1.0kb downstream 3362 true Scaffold1777: 181052-184413 Capsella grandiflora
Cagra.1777s0040 1.0kb downstream 1.0kb downstream 1000 false Scaffold1777: 183414-184413 Capsella grandiflora
Cagra.1777s0040 2.0kb upstream 2.0kb upstream 4362 true Scaffold1777: 179052-183413 Capsella grandiflora
Cagra.1777s0040 2.0kb upstream 2.0kb upstream 2000 false Scaffold1777: 179052-181051 Capsella grandiflora
Cagra.1777s0040 2.0kb downstream 2.0kb downstream 4362 true Scaffold1777: 181052-185413 Capsella grandiflora
Cagra.1777s0040 2.0kb downstream 2.0kb downstream 2000 false Scaffold1777: 183414-185413 Capsella grandiflora
Cagra.1777s0040 5.0kb upstream 5.0kb upstream 7362 true Scaffold1777: 176052-183413 Capsella grandiflora
Cagra.1777s0040 5.0kb upstream 5.0kb upstream 5000 false Scaffold1777: 176052-181051 Capsella grandiflora
Cagra.1777s0040 5.0kb downstream 5.0kb downstream 7362 true Scaffold1777: 181052-188413 Capsella grandiflora
Cagra.1777s0040 5.0kb downstream 5.0kb downstream 5000 false Scaffold1777: 183414-188413 Capsella grandiflora
Cagra.1777s0040 10.0kb upstream 10.0kb upstream 12362 true Scaffold1777: 171052-183413 Capsella grandiflora
Cagra.1777s0040 10.0kb upstream 10.0kb upstream 10000 false Scaffold1777: 171052-181051 Capsella grandiflora
Cagra.1777s0040 10.0kb downstream 10.0kb downstream 12362 true Scaffold1777: 181052-193413 Capsella grandiflora
Cagra.1777s0040 10.0kb downstream 10.0kb downstream 10000 false Scaffold1777: 183414-193413 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343208 5261 Brassicaceae View MSA
123837275 5264 Brassicales-Malvales View MSA
124342552 5266 SBM View MSA
124246037 5268 Malvidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain