Gene : Cagra.1742s0043 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23315:SF119 - U-BOX DOMAIN-CONTAINING PROTEIN 3 Genomic Order:  43
Name:  ? Cagra.1742s0043 Secondary Identifier:  ? PAC:28910570
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1742s0043 0.5kb upstream 0.5kb upstream 4114 true Scaffold1742: 183785-187898 Capsella grandiflora
Cagra.1742s0043 0.5kb upstream 0.5kb upstream 500 false Scaffold1742: 183785-184284 Capsella grandiflora
Cagra.1742s0043 0.5kb downstream 0.5kb downstream 4114 true Scaffold1742: 184285-188398 Capsella grandiflora
Cagra.1742s0043 0.5kb downstream 0.5kb downstream 500 false Scaffold1742: 187899-188398 Capsella grandiflora
Cagra.1742s0043 1.0kb upstream 1.0kb upstream 4614 true Scaffold1742: 183285-187898 Capsella grandiflora
Cagra.1742s0043 1.0kb upstream 1.0kb upstream 1000 false Scaffold1742: 183285-184284 Capsella grandiflora
Cagra.1742s0043 1.0kb downstream 1.0kb downstream 4614 true Scaffold1742: 184285-188898 Capsella grandiflora
Cagra.1742s0043 1.0kb downstream 1.0kb downstream 1000 false Scaffold1742: 187899-188898 Capsella grandiflora
Cagra.1742s0043 2.0kb upstream 2.0kb upstream 5614 true Scaffold1742: 182285-187898 Capsella grandiflora
Cagra.1742s0043 2.0kb upstream 2.0kb upstream 2000 false Scaffold1742: 182285-184284 Capsella grandiflora
Cagra.1742s0043 2.0kb downstream 2.0kb downstream 5614 true Scaffold1742: 184285-189898 Capsella grandiflora
Cagra.1742s0043 2.0kb downstream 2.0kb downstream 2000 false Scaffold1742: 187899-189898 Capsella grandiflora
Cagra.1742s0043 5.0kb upstream 5.0kb upstream 8614 true Scaffold1742: 179285-187898 Capsella grandiflora
Cagra.1742s0043 5.0kb upstream 5.0kb upstream 5000 false Scaffold1742: 179285-184284 Capsella grandiflora
Cagra.1742s0043 5.0kb downstream 5.0kb downstream 8614 true Scaffold1742: 184285-192898 Capsella grandiflora
Cagra.1742s0043 5.0kb downstream 5.0kb downstream 5000 false Scaffold1742: 187899-192898 Capsella grandiflora
Cagra.1742s0043 10.0kb upstream 10.0kb upstream 13614 true Scaffold1742: 174285-187898 Capsella grandiflora
Cagra.1742s0043 10.0kb upstream 10.0kb upstream 10000 false Scaffold1742: 174285-184284 Capsella grandiflora
Cagra.1742s0043 10.0kb downstream 10.0kb downstream 13614 true Scaffold1742: 184285-197898 Capsella grandiflora
Cagra.1742s0043 10.0kb downstream 10.0kb downstream 10000 false Scaffold1742: 187899-197898 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372135 5261 Brassicaceae View MSA
123829079 5264 Brassicales-Malvales View MSA
124344336 5266 SBM View MSA
124243678 5268 Malvidae View MSA
124067773 5270 Rosid View MSA
123748124 5271 Pentapetalae View MSA
122789337 5272 Eudicot View MSA
122048814 5273 Angiosperm View MSA
121345933 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain