Gene : Cagra.1707s0017 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11680:SF7 - SERINE HYDROXYMETHYLTRANSFERASE 6-RELATED Genomic Order:  17
Name:  ? Cagra.1707s0017 Secondary Identifier:  ? PAC:28906751
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-2161 Capsella grandiflora pathologic  
Cgrandiflora PWY-3841 Capsella grandiflora pathologic  
Cgrandiflora SER-GLYSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1707s0017 0.5kb upstream 0.5kb upstream 3524 true Scaffold1707: 77542-81065 Capsella grandiflora
Cagra.1707s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold1707: 80566-81065 Capsella grandiflora
Cagra.1707s0017 0.5kb downstream 0.5kb downstream 3524 true Scaffold1707: 77042-80565 Capsella grandiflora
Cagra.1707s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold1707: 77042-77541 Capsella grandiflora
Cagra.1707s0017 1.0kb upstream 1.0kb upstream 4024 true Scaffold1707: 77542-81565 Capsella grandiflora
Cagra.1707s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold1707: 80566-81565 Capsella grandiflora
Cagra.1707s0017 1.0kb downstream 1.0kb downstream 4024 true Scaffold1707: 76542-80565 Capsella grandiflora
Cagra.1707s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold1707: 76542-77541 Capsella grandiflora
Cagra.1707s0017 2.0kb upstream 2.0kb upstream 5024 true Scaffold1707: 77542-82565 Capsella grandiflora
Cagra.1707s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold1707: 80566-82565 Capsella grandiflora
Cagra.1707s0017 2.0kb downstream 2.0kb downstream 5024 true Scaffold1707: 75542-80565 Capsella grandiflora
Cagra.1707s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold1707: 75542-77541 Capsella grandiflora
Cagra.1707s0017 5.0kb upstream 5.0kb upstream 8024 true Scaffold1707: 77542-85565 Capsella grandiflora
Cagra.1707s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold1707: 80566-85565 Capsella grandiflora
Cagra.1707s0017 5.0kb downstream 5.0kb downstream 8024 true Scaffold1707: 72542-80565 Capsella grandiflora
Cagra.1707s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold1707: 72542-77541 Capsella grandiflora
Cagra.1707s0017 10.0kb upstream 10.0kb upstream 13024 true Scaffold1707: 77542-90565 Capsella grandiflora
Cagra.1707s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold1707: 80566-90565 Capsella grandiflora
Cagra.1707s0017 10.0kb downstream 10.0kb downstream 13024 true Scaffold1707: 67542-80565 Capsella grandiflora
Cagra.1707s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold1707: 67542-77541 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371827 5261 Brassicaceae View MSA
123838669 5264 Brassicales-Malvales View MSA
124343045 5266 SBM View MSA
124253011 5268 Malvidae View MSA
124069560 5270 Rosid View MSA
123741866 5271 Pentapetalae View MSA
122787051 5272 Eudicot View MSA
122046261 5273 Angiosperm View MSA
121345900 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain