Gene : Cagra.2104s0020 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12347:SF9 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  20
Name:  ? Cagra.2104s0020 Secondary Identifier:  ? PAC:28896268
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2104s0020 0.5kb upstream 0.5kb upstream 3275 true Scaffold2104: 65320-68594 Capsella grandiflora
Cagra.2104s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold2104: 68095-68594 Capsella grandiflora
Cagra.2104s0020 0.5kb downstream 0.5kb downstream 3275 true Scaffold2104: 64820-68094 Capsella grandiflora
Cagra.2104s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold2104: 64820-65319 Capsella grandiflora
Cagra.2104s0020 1.0kb upstream 1.0kb upstream 3775 true Scaffold2104: 65320-69094 Capsella grandiflora
Cagra.2104s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold2104: 68095-69094 Capsella grandiflora
Cagra.2104s0020 1.0kb downstream 1.0kb downstream 3775 true Scaffold2104: 64320-68094 Capsella grandiflora
Cagra.2104s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold2104: 64320-65319 Capsella grandiflora
Cagra.2104s0020 2.0kb upstream 2.0kb upstream 4775 true Scaffold2104: 65320-70094 Capsella grandiflora
Cagra.2104s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold2104: 68095-70094 Capsella grandiflora
Cagra.2104s0020 2.0kb downstream 2.0kb downstream 4775 true Scaffold2104: 63320-68094 Capsella grandiflora
Cagra.2104s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold2104: 63320-65319 Capsella grandiflora
Cagra.2104s0020 5.0kb upstream 5.0kb upstream 7775 true Scaffold2104: 65320-73094 Capsella grandiflora
Cagra.2104s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold2104: 68095-73094 Capsella grandiflora
Cagra.2104s0020 5.0kb downstream 5.0kb downstream 7775 true Scaffold2104: 60320-68094 Capsella grandiflora
Cagra.2104s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold2104: 60320-65319 Capsella grandiflora
Cagra.2104s0020 10.0kb upstream 10.0kb upstream 12775 true Scaffold2104: 65320-78094 Capsella grandiflora
Cagra.2104s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold2104: 68095-78094 Capsella grandiflora
Cagra.2104s0020 10.0kb downstream 10.0kb downstream 12775 true Scaffold2104: 55320-68094 Capsella grandiflora
Cagra.2104s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold2104: 55320-65319 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376163 5261 Brassicaceae View MSA
123801159 5264 Brassicales-Malvales View MSA
124298495 5266 SBM View MSA
124253394 5268 Malvidae View MSA
124038816 5270 Rosid View MSA
123752592 5271 Pentapetalae View MSA
122797875 5272 Eudicot View MSA
122041710 5273 Angiosperm View MSA
121349617 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain