Gene : Cagra.2007s0055 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11247:SF25 - LIPID PHOSPHATE PHOSPHATASE EPSILON 1, CHLOROPLASTIC-RELATED Genomic Order:  55
Name:  ? Cagra.2007s0055 Secondary Identifier:  ? PAC:28908637
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRIGLSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2007s0055 0.5kb upstream 0.5kb upstream 2418 true Scaffold2007: 200160-202577 Capsella grandiflora
Cagra.2007s0055 0.5kb upstream 0.5kb upstream 500 false Scaffold2007: 202078-202577 Capsella grandiflora
Cagra.2007s0055 0.5kb downstream 0.5kb downstream 2418 true Scaffold2007: 199660-202077 Capsella grandiflora
Cagra.2007s0055 0.5kb downstream 0.5kb downstream 500 false Scaffold2007: 199660-200159 Capsella grandiflora
Cagra.2007s0055 1.0kb upstream 1.0kb upstream 2918 true Scaffold2007: 200160-203077 Capsella grandiflora
Cagra.2007s0055 1.0kb upstream 1.0kb upstream 1000 false Scaffold2007: 202078-203077 Capsella grandiflora
Cagra.2007s0055 1.0kb downstream 1.0kb downstream 2918 true Scaffold2007: 199160-202077 Capsella grandiflora
Cagra.2007s0055 1.0kb downstream 1.0kb downstream 1000 false Scaffold2007: 199160-200159 Capsella grandiflora
Cagra.2007s0055 2.0kb upstream 2.0kb upstream 3918 true Scaffold2007: 200160-204077 Capsella grandiflora
Cagra.2007s0055 2.0kb upstream 2.0kb upstream 2000 false Scaffold2007: 202078-204077 Capsella grandiflora
Cagra.2007s0055 2.0kb downstream 2.0kb downstream 3918 true Scaffold2007: 198160-202077 Capsella grandiflora
Cagra.2007s0055 2.0kb downstream 2.0kb downstream 2000 false Scaffold2007: 198160-200159 Capsella grandiflora
Cagra.2007s0055 5.0kb upstream 5.0kb upstream 6918 true Scaffold2007: 200160-207077 Capsella grandiflora
Cagra.2007s0055 5.0kb upstream 5.0kb upstream 5000 false Scaffold2007: 202078-207077 Capsella grandiflora
Cagra.2007s0055 5.0kb downstream 5.0kb downstream 6918 true Scaffold2007: 195160-202077 Capsella grandiflora
Cagra.2007s0055 5.0kb downstream 5.0kb downstream 5000 false Scaffold2007: 195160-200159 Capsella grandiflora
Cagra.2007s0055 10.0kb upstream 10.0kb upstream 11918 true Scaffold2007: 200160-212077 Capsella grandiflora
Cagra.2007s0055 10.0kb upstream 10.0kb upstream 10000 false Scaffold2007: 202078-212077 Capsella grandiflora
Cagra.2007s0055 10.0kb downstream 10.0kb downstream 11918 true Scaffold2007: 190160-202077 Capsella grandiflora
Cagra.2007s0055 10.0kb downstream 10.0kb downstream 10000 false Scaffold2007: 190160-200159 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381312 5261 Brassicaceae View MSA
123838864 5264 Brassicales-Malvales View MSA
124340744 5266 SBM View MSA
124241187 5268 Malvidae View MSA
124066688 5270 Rosid View MSA
123737697 5271 Pentapetalae View MSA
122792032 5272 Eudicot View MSA
122049888 5273 Angiosperm View MSA
121311632 5274 Embryophyte View MSA
123426780 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain