Gene : Cagra.2064s0006 C. grandiflora v1.1
Defline:  (1 of 3) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  6
Name:  ? Cagra.2064s0006 Secondary Identifier:  ? PAC:28904036
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5690 Capsella grandiflora pathologic  
Cgrandiflora PWY-6549 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2064s0006 0.5kb upstream 0.5kb upstream 5842 true Scaffold2064: 31526-37367 Capsella grandiflora
Cagra.2064s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold2064: 36868-37367 Capsella grandiflora
Cagra.2064s0006 0.5kb downstream 0.5kb downstream 5842 true Scaffold2064: 31026-36867 Capsella grandiflora
Cagra.2064s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold2064: 31026-31525 Capsella grandiflora
Cagra.2064s0006 1.0kb upstream 1.0kb upstream 6342 true Scaffold2064: 31526-37867 Capsella grandiflora
Cagra.2064s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold2064: 36868-37867 Capsella grandiflora
Cagra.2064s0006 1.0kb downstream 1.0kb downstream 6342 true Scaffold2064: 30526-36867 Capsella grandiflora
Cagra.2064s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold2064: 30526-31525 Capsella grandiflora
Cagra.2064s0006 2.0kb upstream 2.0kb upstream 7342 true Scaffold2064: 31526-38867 Capsella grandiflora
Cagra.2064s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold2064: 36868-38867 Capsella grandiflora
Cagra.2064s0006 2.0kb downstream 2.0kb downstream 7342 true Scaffold2064: 29526-36867 Capsella grandiflora
Cagra.2064s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold2064: 29526-31525 Capsella grandiflora
Cagra.2064s0006 5.0kb upstream 5.0kb upstream 10342 true Scaffold2064: 31526-41867 Capsella grandiflora
Cagra.2064s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold2064: 36868-41867 Capsella grandiflora
Cagra.2064s0006 5.0kb downstream 5.0kb downstream 10342 true Scaffold2064: 26526-36867 Capsella grandiflora
Cagra.2064s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold2064: 26526-31525 Capsella grandiflora
Cagra.2064s0006 10.0kb upstream 10.0kb upstream 15342 true Scaffold2064: 31526-46867 Capsella grandiflora
Cagra.2064s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold2064: 36868-46867 Capsella grandiflora
Cagra.2064s0006 10.0kb downstream 10.0kb downstream 15342 true Scaffold2064: 21526-36867 Capsella grandiflora
Cagra.2064s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold2064: 21526-31525 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360824 5261 Brassicaceae View MSA
123840370 5264 Brassicales-Malvales View MSA
124350117 5266 SBM View MSA
124253803 5268 Malvidae View MSA
124069488 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain