Gene : Cagra.2248s0007 C. grandiflora v1.1
Defline:  (1 of 5) PTHR31500:SF18 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN-RELATED Genomic Order:  7
Name:  ? Cagra.2248s0007 Secondary Identifier:  ? PAC:28917997
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2248s0007 0.5kb upstream 0.5kb upstream 2835 true Scaffold2248: 12525-15359 Capsella grandiflora
Cagra.2248s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold2248: 12525-13024 Capsella grandiflora
Cagra.2248s0007 0.5kb downstream 0.5kb downstream 2835 true Scaffold2248: 13025-15859 Capsella grandiflora
Cagra.2248s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold2248: 15360-15859 Capsella grandiflora
Cagra.2248s0007 1.0kb upstream 1.0kb upstream 3335 true Scaffold2248: 12025-15359 Capsella grandiflora
Cagra.2248s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold2248: 12025-13024 Capsella grandiflora
Cagra.2248s0007 1.0kb downstream 1.0kb downstream 3335 true Scaffold2248: 13025-16359 Capsella grandiflora
Cagra.2248s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold2248: 15360-16359 Capsella grandiflora
Cagra.2248s0007 2.0kb upstream 2.0kb upstream 4335 true Scaffold2248: 11025-15359 Capsella grandiflora
Cagra.2248s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold2248: 11025-13024 Capsella grandiflora
Cagra.2248s0007 2.0kb downstream 2.0kb downstream 4335 true Scaffold2248: 13025-17359 Capsella grandiflora
Cagra.2248s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold2248: 15360-17359 Capsella grandiflora
Cagra.2248s0007 5.0kb upstream 5.0kb upstream 7335 true Scaffold2248: 8025-15359 Capsella grandiflora
Cagra.2248s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold2248: 8025-13024 Capsella grandiflora
Cagra.2248s0007 5.0kb downstream 5.0kb downstream 7335 true Scaffold2248: 13025-20359 Capsella grandiflora
Cagra.2248s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold2248: 15360-20359 Capsella grandiflora
Cagra.2248s0007 10.0kb upstream 10.0kb upstream 12335 true Scaffold2248: 3025-15359 Capsella grandiflora
Cagra.2248s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold2248: 3025-13024 Capsella grandiflora
Cagra.2248s0007 10.0kb downstream 10.0kb downstream 12335 true Scaffold2248: 13025-25359 Capsella grandiflora
Cagra.2248s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold2248: 15360-25359 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371949 5261 Brassicaceae View MSA
123836603 5264 Brassicales-Malvales View MSA
124340657 5266 SBM View MSA
124251241 5268 Malvidae View MSA
124071035 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain