Gene : Cagra.2248s0016 C. grandiflora v1.1
Defline:  (1 of 6) PTHR13935:SF54 - TRANSCRIPTION FACTOR BHLH118-RELATED Genomic Order:  16
Name:  ? Cagra.2248s0016 Secondary Identifier:  ? PAC:28917985
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2248s0016 0.5kb upstream 0.5kb upstream 1536 true Scaffold2248: 41596-43131 Capsella grandiflora
Cagra.2248s0016 0.5kb upstream 0.5kb upstream 500 false Scaffold2248: 41596-42095 Capsella grandiflora
Cagra.2248s0016 0.5kb downstream 0.5kb downstream 1536 true Scaffold2248: 42096-43631 Capsella grandiflora
Cagra.2248s0016 0.5kb downstream 0.5kb downstream 500 false Scaffold2248: 43132-43631 Capsella grandiflora
Cagra.2248s0016 1.0kb upstream 1.0kb upstream 2036 true Scaffold2248: 41096-43131 Capsella grandiflora
Cagra.2248s0016 1.0kb upstream 1.0kb upstream 1000 false Scaffold2248: 41096-42095 Capsella grandiflora
Cagra.2248s0016 1.0kb downstream 1.0kb downstream 2036 true Scaffold2248: 42096-44131 Capsella grandiflora
Cagra.2248s0016 1.0kb downstream 1.0kb downstream 1000 false Scaffold2248: 43132-44131 Capsella grandiflora
Cagra.2248s0016 2.0kb upstream 2.0kb upstream 3036 true Scaffold2248: 40096-43131 Capsella grandiflora
Cagra.2248s0016 2.0kb upstream 2.0kb upstream 2000 false Scaffold2248: 40096-42095 Capsella grandiflora
Cagra.2248s0016 2.0kb downstream 2.0kb downstream 3036 true Scaffold2248: 42096-45131 Capsella grandiflora
Cagra.2248s0016 2.0kb downstream 2.0kb downstream 2000 false Scaffold2248: 43132-45131 Capsella grandiflora
Cagra.2248s0016 5.0kb upstream 5.0kb upstream 6036 true Scaffold2248: 37096-43131 Capsella grandiflora
Cagra.2248s0016 5.0kb upstream 5.0kb upstream 5000 false Scaffold2248: 37096-42095 Capsella grandiflora
Cagra.2248s0016 5.0kb downstream 5.0kb downstream 6036 true Scaffold2248: 42096-48131 Capsella grandiflora
Cagra.2248s0016 5.0kb downstream 5.0kb downstream 5000 false Scaffold2248: 43132-48131 Capsella grandiflora
Cagra.2248s0016 10.0kb upstream 10.0kb upstream 11036 true Scaffold2248: 32096-43131 Capsella grandiflora
Cagra.2248s0016 10.0kb upstream 10.0kb upstream 10000 false Scaffold2248: 32096-42095 Capsella grandiflora
Cagra.2248s0016 10.0kb downstream 10.0kb downstream 11036 true Scaffold2248: 42096-53131 Capsella grandiflora
Cagra.2248s0016 10.0kb downstream 10.0kb downstream 10000 false Scaffold2248: 43132-53131 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379395 5261 Brassicaceae View MSA
123802246 5264 Brassicales-Malvales View MSA
124351097 5266 SBM View MSA
124249323 5268 Malvidae View MSA
124073139 5270 Rosid View MSA
123750941 5271 Pentapetalae View MSA
122792125 5272 Eudicot View MSA
122050150 5273 Angiosperm View MSA
121311764 5274 Embryophyte View MSA
123349017 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain