Gene : Cagra.2235s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10285:SF53 - URIDINE KINASE Genomic Order:  4
Name:  ? Cagra.2235s0004 Secondary Identifier:  ? PAC:28907719
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7193 Capsella grandiflora pathologic  
Cgrandiflora PWY-7196 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2235s0004 0.5kb upstream 0.5kb upstream 6513 true Scaffold2235: 17244-23756 Capsella grandiflora
Cagra.2235s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold2235: 17244-17743 Capsella grandiflora
Cagra.2235s0004 0.5kb downstream 0.5kb downstream 6513 true Scaffold2235: 17744-24256 Capsella grandiflora
Cagra.2235s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold2235: 23757-24256 Capsella grandiflora
Cagra.2235s0004 1.0kb upstream 1.0kb upstream 7013 true Scaffold2235: 16744-23756 Capsella grandiflora
Cagra.2235s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold2235: 16744-17743 Capsella grandiflora
Cagra.2235s0004 1.0kb downstream 1.0kb downstream 7013 true Scaffold2235: 17744-24756 Capsella grandiflora
Cagra.2235s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold2235: 23757-24756 Capsella grandiflora
Cagra.2235s0004 2.0kb upstream 2.0kb upstream 8013 true Scaffold2235: 15744-23756 Capsella grandiflora
Cagra.2235s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold2235: 15744-17743 Capsella grandiflora
Cagra.2235s0004 2.0kb downstream 2.0kb downstream 8013 true Scaffold2235: 17744-25756 Capsella grandiflora
Cagra.2235s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold2235: 23757-25756 Capsella grandiflora
Cagra.2235s0004 5.0kb upstream 5.0kb upstream 11013 true Scaffold2235: 12744-23756 Capsella grandiflora
Cagra.2235s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold2235: 12744-17743 Capsella grandiflora
Cagra.2235s0004 5.0kb downstream 5.0kb downstream 11013 true Scaffold2235: 17744-28756 Capsella grandiflora
Cagra.2235s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold2235: 23757-28756 Capsella grandiflora
Cagra.2235s0004 10.0kb upstream 10.0kb upstream 16013 true Scaffold2235: 7744-23756 Capsella grandiflora
Cagra.2235s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold2235: 7744-17743 Capsella grandiflora
Cagra.2235s0004 10.0kb downstream 10.0kb downstream 16013 true Scaffold2235: 17744-33756 Capsella grandiflora
Cagra.2235s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold2235: 23757-33756 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369463 5261 Brassicaceae View MSA
123834288 5264 Brassicales-Malvales View MSA
124339414 5266 SBM View MSA
124241598 5268 Malvidae View MSA
124067943 5270 Rosid View MSA
123741616 5271 Pentapetalae View MSA
122787243 5272 Eudicot View MSA
122044880 5273 Angiosperm View MSA
121351427 5274 Embryophyte View MSA
123427517 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain